Structure of PDB 8qfd Chain k

Receptor sequence
>8qfdk (length=68) Species: 9606 (Homo sapiens) [Search protein sequence]
PRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKE
KAEKLKQSLPPGLAVKEL
3D structure
PDB8qfd The UFM1 E3 ligase recognizes and releases 60S ribosomes from ER translocons
Chaink
Resolution2.2 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna k P2 R3 R17 D19 K26 K33 K35 R37 S39 R40 Y41 T44 L69 P1 R2 R16 D18 K25 K32 K34 R36 S38 R39 Y40 T43 L68
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0005515 protein binding
Biological Process
GO:0001501 skeletal system development
GO:0001503 ossification
GO:0002181 cytoplasmic translation
GO:0006412 translation
GO:0006417 regulation of translation
GO:0007605 sensory perception of sound
GO:0022618 protein-RNA complex assembly
GO:0034463 90S preribosome assembly
GO:0042474 middle ear morphogenesis
GO:0048318 axial mesoderm development
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0005925 focal adhesion
GO:0014069 postsynaptic density
GO:0022625 cytosolic large ribosomal subunit
GO:0022626 cytosolic ribosome
GO:0033291 eukaryotic 80S initiation complex
GO:0045202 synapse
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Cellular Component
External links
PDB RCSB:8qfd, PDBe:8qfd, PDBj:8qfd
PDBsum8qfd
PubMed38383789
UniProtP63173|RL38_HUMAN Large ribosomal subunit protein eL38 (Gene Name=RPL38)

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