Structure of PDB 7obr Chain k

Receptor sequence

>7obrk (length=69) Species: 9986 (Oryctolagus cuniculus)

PRKIEEIKDFLLTARRKDAKSVKIKKNKDNVKFKVRCSRYLYTLVITDKE
KAEKLKQSLPPGLAVKELK

3D structure

• PDB: 7obr Molecular mechanism of cargo recognition and handover by the mammalian signal recognition particle.
• Chain: k
• Resolution: 2.8 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	k	P2 R3 K4 D19 K24 N28 K33 K35 R37 S39 R40 Y41 L42 T44 L69	P1 R2 K3 D18 K23 N27 K32 K34 R36 S38 R39 Y40 L41 T43 L68

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Fri Nov 15 23:19:48 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '7obr', asym_id = 'k', title = 'Molecular mechanism of cargo recognition and handover by the mammalian signal recognition particle.'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='7obr', asym_id='k', title='Molecular mechanism of cargo recognition and handover by the mammalian signal recognition particle.')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '7obr', asym_id = 'k'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='7obr', asym_id='k')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>