Structure of PDB 8k23 Chain j

Receptor sequence

>8k23j (length=302) Species: 979527 (Vibrio phage ICP1_2004_A) [Search protein sequence]

TKLKAPAVLAYSRKINPTNALMFAVNWSDRDNTTAVMVGTKTVAGTQSVR
GNPNDADKGNIQTVNFANLPHNKNTLLVKYNVKFVGDVFKAELGGGEYSN
TLQTALENTDFGTLAYRYVYNIAAGRTLWRNRVGAESIETVITVNDQTFT
FSDLLVNEFDEDVDVAEIADMVAGVLSGEGFVTLKVEHYMLLGEGSEVFP
SQEFVENSKLSKQLFDLNGQAAMHDQKIGNAIRTIDTWYEDATTPIAVEP
YGSVVRNGVAYRAGNKTDLFTLMDGAVNGKSLTEEDQMFVTANLIRGGVF
GG

3D structure

PDB

8k23 ICP1 Csy-dsDNA-Cas1-Cas2/3 complex (fully assembled form) composited structure with C1 symmetry

Chain

Resolution

3.75 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	j	R14 V44 A45 G46 E93 L94 W130 R131 Q203 F205 Q227 K228 N231 R234 R257 R297 G299 V300	R13 V43 A44 G45 E92 L93 W129 R130 Q202 F204 Q226 K227 N230 R233 R256 R296 G298 V299
BS02	dna	j	A8 V9 V50 K59 G60 N61 I62 Q63 F205 E207 V300	A7 V8 V49 K58 G59 N60 I61 Q62 F204 E206 V299

External links

PDB	RCSB:8k23, PDBe:8k23, PDBj:8k23
PDBsum	8k23
PubMed
UniProt	F1D5V6

[Back to BioLiP]