Structure of PDB 8etc Chain j

Receptor sequence

>8etcj (length=75) Species: 4896 (Schizosaccharomyces pombe)

MRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTT
GTGRMSYLKKVHRSFKNGFRSGKPA

3D structure

• PDB: 8etc Chromatin localization of nucleophosmin organizes ribosome biogenesis.
• Chain: j
• Resolution: 3.1 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	j	R11 H12 N13 K14 S15 H16 R25 S26 H28 Q30 A35 K43 T44 R45 Y47 N48 W49 K52 A53 R55 R56 H71 G77 S80 G81	R2 H3 N4 K5 S6 H7 R16 S17 H19 Q21 A26 K34 T35 R36 Y38 N39 W40 K43 A44 R46 R47 H62 G68 S71 G72
BS02	rna	j	R20 R21 C22 G23 I29 Y39 T59 G62 R63 M64 Y66 L67 H71 R72 F74 N76 R79 S80 G81 P83	R11 R12 C13 G14 I20 Y30 T50 G53 R54 M55 Y57 L58 H62 R63 F65 N67 R70 S71 G72 P74
BS03	ZN	j	C19 C22 C34 C37	C10 C13 C25 C28

Gene Ontology

Molecular Function

• GO:0003723 RNA binding
• GO:0003735 structural constituent of ribosome
• GO:0008270 zinc ion binding
• GO:0019843 rRNA binding
• GO:0046872 metal ion binding

Biological Process

• GO:0002181 cytoplasmic translation
• GO:0006412 translation

Cellular Component

• GO:0005737 cytoplasm
• GO:0005829 cytosol
• GO:0005840 ribosome
• GO:0022625 cytosolic large ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:8etc, PDBe:8etc, PDBj:8etc
• PDBsum: 8etc
• PubMed: 36423630
• UniProt: P05733|RL37B_SCHPO Large ribosomal subunit protein eL37B (Gene Name=rpl3702)