Structure of PDB 7umt Chain j

Receptor sequence
>7umtj (length=274) Species: 10912 (Rotavirus) [Search protein sequence]
YGLNIPITGSMDTVYSNSTREEVFLTSTLCLYYPTEASTQISDGEWKDSL
SQMFLIKGWPTGSVYFKEYSNIVDFSVDPQLYCDYNLVLMKYDQSLELDM
SELADLILNEWLCNPMDITLYYYQQSGESNKWISMGSSCTVKVCPLNTQT
LGIGCQTTNVDSFETVAENEKLAIVDVVDGINHKINLTTTTCTIRNCKKL
GPRENVAVIQVGGANILDITADPTTNPQIERMMRVNWKRWWQVFYTIVDY
INQIVQVMSKRSRSLNSAAFYYRV
3D structure
PDB7umt Rotavirus VP4 Epitope of a Broadly Neutralizing Human Antibody Defined by Its Structure Bound with an Attenuated-Strain Virion.
Chainj
Resolution3.4 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CA j D151 E154 E222 L224 A225 D99 E102 E170 L172 A173
BS02 CA j D270 T272 D274 T277 D218 T220 D222 T225
BS03 CA j Q177 D228 D231 Q125 D176 D179
BS04 CA j G206 S214 E216 G154 S162 E164
Gene Ontology
Molecular Function
GO:0046872 metal ion binding
Cellular Component
GO:0016020 membrane
GO:0019028 viral capsid
GO:0039621 T=13 icosahedral viral capsid
GO:0039624 viral outer capsid
GO:0044165 host cell endoplasmic reticulum
GO:0044166 host cell endoplasmic reticulum lumen

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Molecular Function
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Cellular Component
External links
PDB RCSB:7umt, PDBe:7umt, PDBj:7umt
PDBsum7umt
PubMed35924923
UniProtB1NP55

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