Structure of PDB 7ums Chain j

Receptor sequence
>7umsj (length=274) Species: 10912 (Rotavirus) [Search protein sequence]
YGLNIPITGSMDTVYSNSTREEVFLTSTLCLYYPTEASTQISDGEWKDSL
SQMFLIKGWPTGSVYFKEYSNIVDFSVDPQLYCDYNLVLMKYDQSLELDM
SELADLILNEWLCNPMDITLYYYQQSGESNKWISMGSSCTVKVCPLNTQT
LGIGCQTTNVDSFETVAENEKLAIVDVVDGINHKINLTTTTCTIRNCKKL
GPRENVAVIQVGGANILDITADPTTNPQIERMMRVNWKRWWQVFYTIVDY
INQIVQVMSKRSRSLNSAAFYYRV
3D structure
PDB7ums Rotavirus VP4 Epitope of a Broadly Neutralizing Human Antibody Defined by Its Structure Bound with an Attenuated-Strain Virion.
Chainj
Resolution3.5 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CA j D151 E154 E222 L224 A225 D99 E102 E170 L172 A173
BS02 CA j D270 T272 D274 T277 D218 T220 D222 T225
BS03 CA j Q177 D228 D231 Q125 D176 D179
BS04 CA j G206 S214 E216 G154 S162 E164
Gene Ontology
Molecular Function
GO:0046872 metal ion binding
Cellular Component
GO:0016020 membrane
GO:0019028 viral capsid
GO:0039621 T=13 icosahedral viral capsid
GO:0039624 viral outer capsid
GO:0044165 host cell endoplasmic reticulum
GO:0044166 host cell endoplasmic reticulum lumen

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:7ums, PDBe:7ums, PDBj:7ums
PDBsum7ums
PubMed35924923
UniProtB1NP55

[Back to BioLiP]