Structure of PDB 6vwm Chain j

Receptor sequence
>6vwmj (length=117) Species: 562 (Escherichia coli) [Search protein sequence]
RKQVSDGVAHIHASFNNTIVTITDRQGNALGWATAGGSGFRGSRKSTPFA
AQVAAERCADAVKEYGIKNLEVMVKGPGPGRESTIRALNAAGFRITNITD
VTPIPHNGCRPPKKRRV
3D structure
PDB6vwm mRNA stem-loops can pause the ribosome by hindering A-site tRNA binding.
Chainj
Resolution3.4 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna j H21 N27 N28 I30 G38 N39 A40 W43 T45 G47 G48 G53 S54 K56 I115 P116 H117 N118 G119 C120 R121 P123 K124 R126 R127 V128 H10 N16 N17 I19 G27 N28 A29 W32 T34 G36 G37 G42 S43 K45 I104 P105 H106 N107 G108 C109 R110 P112 K113 R115 R116 V117
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0005515 protein binding
GO:0019843 rRNA binding
GO:0070181 small ribosomal subunit rRNA binding
Biological Process
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6vwm, PDBe:6vwm, PDBj:6vwm
PDBsum6vwm
PubMed32427100
UniProtP0A7R9|RS11_ECOLI Small ribosomal subunit protein uS11 (Gene Name=rpsK)

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