Structure of PDB 6swa Chain j

Receptor sequence

>6swaj (length=50) Species: 10090 (Mus musculus)

SSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL

3D structure

• PDB: 6swa Protein Synthesis in the Developing Neocortex at Near-Atomic Resolution Reveals Ebp1-Mediated Neuronal Proteostasis at the 60S Tunnel Exit.
• Chain: j
• Resolution: 3.1 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	j	S2 S3 H4 K5 K10 L13 Q17 P22 I35 R36 Y37 S39 K40 R41 R42 H43 W44 R45 K48 L49	S1 S2 H3 K4 K9 L12 Q16 P21 I34 R35 Y36 S38 K39 R40 R41 H42 W43 R44 K47 L48
BS02	rna	j	T6 R8 R11 K15 Q19 R21 I23 P24 W26 I27 M29 K30 T31	T5 R7 R10 K14 Q18 R20 I22 P23 W25 I26 M28 K29 T30

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome

Biological Process

• GO:0006412 translation

Cellular Component

• GO:0005840 ribosome
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:6swa, PDBe:6swa, PDBj:6swa
• PDBsum: 6swa
• PubMed: 33357414
• UniProt: Q505A8