Structure of PDB 6q9a Chain j

Receptor sequence

>6q9aj (length=156) Species: 562 (Escherichia coli) [Search protein sequence]

ELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAA
IQKAMEKARRNMINVALNNGTLQHPVKGVHTGSRVFMQPASEGTGIIAGG
AMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGK
SVEEIL

3D structure

PDB

6q9a How a circularized tmRNA moves through the ribosome.

Chain

Resolution

3.7 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	j	N19 V21 S22 K23 T24 V25 K26 G27 R29 Y50 K52 R54 K62 R69 T90 F95 Q97 S100 A107 R112 L124 A125 K126 A127 Y128 S130 N132 N135	N10 V12 S13 K14 T15 V16 K17 G18 R20 Y41 K43 R45 K53 R60 T81 F86 Q88 S91 A98 R103 L115 A116 K117 A118 Y119 S121 N123 N126
BS02	rna	j	V18 R29 F33 V56	V9 R20 F24 V47

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0005515	protein binding
GO:0019843	rRNA binding

	Biological Process
GO:0000028	ribosomal small subunit assembly
GO:0002181	cytoplasmic translation
GO:0006412	translation
GO:0046677	response to antibiotic
GO:1990145	maintenance of translational fidelity

	Cellular Component
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0015935	small ribosomal subunit
GO:0022627	cytosolic small ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:6q9a, PDBe:6q9a, PDBj:6q9a
PDBsum	6q9a
PubMed	30765567
UniProt	P0A7W1\|RS5_ECOLI Small ribosomal subunit protein uS5 (Gene Name=rpsE)

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