Structure of PDB 6gsn Chain j

Receptor sequence
>6gsnj (length=249) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence]
TSHCRFYENKYPEIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELS
RRRIRSIQKLIRVGKNDVAVVLRVDKEKGYIDLSKRRVSSEDIIKCEEKY
QKSKTVHSILRYCAEKFQIPLEELYKTIAWPLSRKFGHAYEAFKLSIIDE
TVWEGIEPPSKDVLDELKNYISVKIRADVEVSCFSYEGIDAIKDALKSAE
DVKVKLVAAPLYVLTTQALDKQKGIEQLESAIEKITEVITKYGGVCNIT
3D structure
PDB6gsn Large-scale movement of eIF3 domains during translation initiation modulate start codon selection.
Chainj
Resolution5.75 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna j R55 R57 R53 R55
BS02 rna j R55 R57 R53 R55
BS03 rna j S58 Q60 K67 N68 Y102 Q103 R113 Y114 K118 Y172 V223 A224 P226 S56 Q58 K65 N66 Y100 Q101 R111 Y112 K116 Y170 V207 A208 P210
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
GO:0003743 translation initiation factor activity

View graph for
Molecular Function
External links
PDB RCSB:6gsn, PDBe:6gsn, PDBj:6gsn
PDBsum6gsn
PubMed34648019
UniProtP20459|IF2A_YEAST Eukaryotic translation initiation factor 2 subunit alpha (Gene Name=SUI2)

[Back to BioLiP]