Structure of PDB 6cb1 Chain j

Receptor sequence
>6cb1j (length=72) Species: 1247190 (Saccharomyces cerevisiae BY4741) [Search protein sequence]
KSHTLCNRCGRRSFHVQKKTCSSCGYPAAKTRSYNWGAKAKRRHTTGTGR
MRYLKHVSRRFKNGFQTGSASK
3D structure
PDB6cb1 Modular assembly of the nucleolar pre-60S ribosomal subunit.
Chainj
Resolution4.6 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna j S35 A42 K43 T44 Y47 N48 A53 S22 A29 K30 T31 Y34 N35 A40
BS02 rna j R21 C22 G23 A42 T59 G60 G62 M64 Y66 L67 S71 Q79 T80 G81 S82 A83 S84 R8 C9 G10 A29 T46 G47 G49 M51 Y53 L54 S58 Q66 T67 G68 S69 A70 S71
BS03 ZN j C19 C22 C34 C37 C6 C9 C21 C24
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0008270 zinc ion binding
GO:0019843 rRNA binding
GO:0046872 metal ion binding
Biological Process
GO:0000448 cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:0030687 preribosome, large subunit precursor
GO:0044391 ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Cellular Component
External links
PDB RCSB:6cb1, PDBe:6cb1, PDBj:6cb1
PDBsum6cb1
PubMed29512650
UniProtP49166|RL37A_YEAST Large ribosomal subunit protein eL37A (Gene Name=RPL37A)

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