Structure of PDB 8qfd Chain h

Receptor sequence
>8qfdh (length=120) Species: 9606 (Homo sapiens) [Search protein sequence]
IKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKS
IARVLTVINQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLK
TKKQQRKERLYPLRKYAVKA
3D structure
PDB8qfd The UFM1 E3 ligase recognizes and releases 60S ribosomes from ER translocons
Chainh
Resolution2.2 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna h Y78 R84 R93 K106 R109 K110 Y75 R81 R90 K103 R106 K107
BS02 rna h R7 K35 S45 R48 R51 K52 A55 R56 L58 T59 N62 Q63 K66 K86 R89 R92 R4 K32 S42 R45 R48 K49 A52 R53 L55 T56 N59 Q60 K63 K83 R86 R89
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003729 mRNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0016020 membrane
GO:0022625 cytosolic large ribosomal subunit
GO:0022626 cytosolic ribosome
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Cellular Component
External links
PDB RCSB:8qfd, PDBe:8qfd, PDBj:8qfd
PDBsum8qfd
PubMed38383789
UniProtP42766|RL35_HUMAN Large ribosomal subunit protein uL29 (Gene Name=RPL35)

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