Structure of PDB 8b5l Chain g

Receptor sequence

>8b5lg (length=114) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

VQRLTYRRRLSYNTASNKTRLSRTPGNRIVYLYTKKVGKAPKSACGVCPG
RLRGVRAVRPKVLMRLSKTKKHVSRAYGGSMCAKCVRDRIKRAFLIEEQK
IVVKVLKAQAQSQK

3D structure

PDB

8b5l Structural insights into TRAP association with ribosome-Sec61 complex and translocon inhibition by a CADA derivative.

Chain

Resolution

2.86 Å

3D
structure

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	g	V2 R4 L5 T6 Y7 R8 R9 R10 S12 Y13 T15 R21 L22 R24 T25 P26 G27 N28 Y32 Y34 K36 K37 K40 P42 K43 V48 R54 G55 R60 P61 K62 L64 R66 K69 T70 K72 H73 V74 S75 R76 Y78 G79 G80 R90 R93 I97 E98 Q100	V1 R3 L4 T5 Y6 R7 R8 R9 S11 Y12 T14 R20 L21 R23 T24 P25 G26 N27 Y31 Y33 K35 K36 K39 P41 K42 V47 R53 G54 R59 P60 K61 L63 R65 K68 T69 K71 H72 V73 S74 R75 Y77 G78 G79 R89 R92 I96 E97 Q99
BS02	ZN	g	C46 C49 C86	C45 C48 C85

Gene Ontology

	Molecular Function
GO:0003735	structural constituent of ribosome

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005783	endoplasmic reticulum
GO:0005829	cytosol
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

External links

PDB	RCSB:8b5l, PDBe:8b5l, PDBj:8b5l
PDBsum	8b5l
PubMed	36867692
UniProt	G1TXG5\|RL34_RABIT Large ribosomal subunit protein eL34 (Gene Name=RPL34)