Structure of PDB 7nad Chain g

Receptor sequence

>7nadg (length=112) Species: 1247190 (Saccharomyces cerevisiae BY4741)

AQRVTFRRRNPYNTRSNKIKVVKTPGGILRAQHVKKLATRPKCGDCGSAL
QGISTLRPRQYATVSKTHKTVSRAYGGSRCANCVKERIIRAFLIEEQKIV
KKVVKEQTEAAK

3D structure

• PDB: 7nad Sequence-specific remodeling of a topologically complex RNP substrate by Spb4.
• Chain: g
• Resolution: 3.04 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	g	A2 R4 V5 T6 F7 R8 R9 R10 N11 P12 Y13 T15 R16 S17 V22 K24 T25 P26 G27 L30 R31 Q33 K36 K37 T40 R41 K43 G45 Q52 G53 I54 S55 T56 P59 R60 A63 S66 K67 T68 K70 T71 S73 R74 Y76 G78 A82 N83	A1 R3 V4 T5 F6 R7 R8 R9 N10 P11 Y12 T14 R15 S16 V21 K23 T24 P25 G26 L29 R30 Q32 K35 K36 T39 R40 K42 G44 Q51 G52 I53 S54 T55 P58 R59 A62 S65 K66 T67 K69 T70 S72 R73 Y75 G77 A81 N82
BS02	ZN	g	C44 C47 C84	C43 C46 C83

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome

Biological Process

• GO:0002181 cytoplasmic translation
• GO:0006412 translation
• GO:0042254 ribosome biogenesis

Cellular Component

• GO:0005737 cytoplasm
• GO:0005829 cytosol
• GO:0005840 ribosome
• GO:0022625 cytosolic large ribosomal subunit
• GO:0030687 preribosome, large subunit precursor
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:7nad, PDBe:7nad, PDBj:7nad
• PDBsum: 7nad
• PubMed: 36482249
• UniProt: P87262|RL34A_YEAST Large ribosomal subunit protein eL34A (Gene Name=RPL34A)