Structure of PDB 8q4f Chain f

Receptor sequence

>8q4ff (length=177) Species: 562 (Escherichia coli) [Search protein sequence]

AKLHDYYKDEVVKKLMTEFNYNSVMQVPRVEKITLNMGVGEAIADKKLLD
NAAADLAAISGQKPLITKARKSVAGFKIRQGYPIGCKVTLRGERMWEFFE
RLITIAVPRIRDFRGLSAKSFDGRGNYSMGVREQIIFPEIDYDKVDRVRG
LDITITTTAKSDEEGRALLAAFDFPFR

3D structure

PDB

8q4f Structure of arbekacin bound Escherichia coli 70S ribosome

Chain

Resolution

3.1 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	rna	f	S73 V74 A75 K78 R80	S72 V73 A74 K77 R79
BS02	rna	f	T35 N37 G39 G41 T68 A70 R71 K72 F77 K88 S121 D123 S129 M130 G151 L152 D153	T34 N36 G38 G40 T67 A69 R70 K71 F76 K87 S120 D122 S128 M129 G150 L151 D152
BS03	rna	f	S24 M26 Q27 K64 L66 K69 T90 R92	S23 M25 Q26 K63 L65 K68 T89 R91

External links

PDB	RCSB:8q4f, PDBe:8q4f, PDBj:8q4f
PDBsum	8q4f
PubMed
UniProt	P62399\|RL5_ECOLI Large ribosomal subunit protein uL5 (Gene Name=rplE)

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