Structure of PDB 8pj6 Chain f

Receptor sequence

>8pj6f (length=149) Species: 9606 (Homo sapiens) [Search protein sequence]

VIPEKFQHILRVLNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLT
KRAGELTEDEVERVITIMQNPRQYKIPDWFLNRQKDVKDGKYSQVLANGL
DNKLREDLERLKKIRAHRGLRHFWGLRVRGQHTKTTGRRGRTVGVSKKK

3D structure

PDB

8pj6 Structural basis for translational control by the human 48S initiation complex from codon scanning toward subunit joining

Chain

Resolution

2.9 Å

3D
structure

[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	rna	f	R24 K25 F28 K34 G35 V36 G37 R38 R39 Y40 R55 W82 F83 N85 Q87 K88 L107 D110 H120 R121 R124 H125 L129 R130 V131 R132 G133 Q134 H135 T136 K137 T138 T139 G140 R141 R142 R144 T145 V146 G147	R21 K22 F25 K31 G32 V33 G34 R35 R36 Y37 R52 W79 F80 N82 Q84 K85 L104 D107 H117 R118 R121 H122 L126 R127 V128 R129 G130 Q131 H132 T133 K134 T135 T136 G137 R138 R139 R141 T142 V143 G144
BS02	rna	f	V148 S149 K150 K151	V145 S146 K147 K148
BS03	MG	f	T136 T139	T133 T136

External links

PDB	RCSB:8pj6, PDBe:8pj6, PDBj:8pj6
PDBsum	8pj6
PubMed
UniProt	P62269\|RS18_HUMAN Small ribosomal subunit protein uS13 (Gene Name=RPS18)

[Back to BioLiP]