Structure of PDB 5njt Chain f

Receptor sequence

>5njtf (length=138) Species: 224308 (Bacillus subtilis subsp. subtilis str. 168)

MLLPKRVKYRREHRGKMRGRAKGGTEVHFGEFGIQALEASWITNRQIEAA
RIAMTRYMKRGGKVWIKIFPSKPYTAKPLEVRMGSGKGAPEGWVAVVKPG
KVLFEISGVSEEVAREALRLASHKLPIKTKFVKREEIG

3D structure

• PDB: 5njt Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
• Chain: f
• Resolution: 3.8 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	f	K5 K8 Y9 R11 H13 R14 G15 K16 M17 K22 G23 G24 H28 F29 W41 Q46 R56 W65 F69 T75 K77 E80 R82 M83 G84 S85 G86 K87 K101 L120 H123 K124 K128	K5 K8 Y9 R11 H13 R14 G15 K16 M17 K22 G23 G24 H28 F29 W41 Q46 R56 W65 F69 T75 K77 E80 R82 M83 G84 S85 G86 K87 K101 L120 H123 K124 K128
BS02	rna	f	R18 G19	R18 G19

Gene Ontology

Molecular Function

• GO:0000049 tRNA binding
• GO:0003735 structural constituent of ribosome
• GO:0019843 rRNA binding

Biological Process

• GO:0006412 translation

Cellular Component

• GO:0005840 ribosome
• GO:0022625 cytosolic large ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:5njt, PDBe:5njt, PDBj:5njt
• PDBsum: 5njt
• PubMed: 28468753
• UniProt: P14577|RL16_BACSU Large ribosomal subunit protein uL16 (Gene Name=rplP)