Structure of PDB 3j7q Chain f

Receptor sequence

>3j7qf (length=109) Species: 9823 (Sus scrofa)

SGRLWSKAIFAGYKRGLRNQREHTALLKIEGVYARDETEFYLGKRCAYVY
KAKNNTVTPGGKPNKTRVIWGKVTRAHGNSGMVRAKFRSNLPAKAIGHRI
RVMLYPSRI

3D structure

• PDB: 3j7q Structure of the Mammalian ribosome-sec61 complex to 3.4 a resolution.
• Chain: f
• Resolution: 3.4 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	f	S2 G3 R4 W6 K8 Y14 K15 R16 G17 L18 R19 N20 Q21 R22 E23 H24 K29 R36 R46 Y51 K52 A53 K54 N55 T57 V58 P60 P64 T67 R68 V69 W71 K73 R76 H78 G79 N80 S81 R85 R89 S90 N91 L92 P93 A94 K95 H99 R100 R102 R109	S1 G2 R3 W5 K7 Y13 K14 R15 G16 L17 R18 N19 Q20 R21 E22 H23 K28 R35 R45 Y50 K51 A52 K53 N54 T56 V57 P59 P63 T66 R67 V68 W70 K72 R75 H77 G78 N79 S80 R84 R88 S89 N90 L91 P92 A93 K94 H98 R99 R101 R108

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Sat Nov 16 20:52:02 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '3j7q', asym_id = 'f', title = 'Structure of the Mammalian ribosome-sec61 complex to 3.4 a resolution.'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='3j7q', asym_id='f', title='Structure of the Mammalian ribosome-sec61 complex to 3.4 a resolution.')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '3j7q', asym_id = 'f'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='3j7q', asym_id='f')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>