Structure of PDB 6d9j Chain ee

Receptor sequence

>6d9jee (length=55) Species: 9986 (Oryctolagus cuniculus)

GHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIG
FIKLD

3D structure

• PDB: 6d9j Dual tRNA mimicry in the Cricket Paralysis Virus IRES uncovers an unexpected similarity with the Hepatitis C Virus IRES.
• Chain: ee
• Resolution: 3.2 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	ee	G2 H3 L6 H10 P11 R12 K13 F14 Q16 G17 C24 N26 R27 H28 G29 L30 I31 R32 K33 Y34 Q41 C42 D56	G1 H2 L5 H9 P10 R11 K12 F13 Q15 G16 C23 N25 R26 H27 G28 L29 I30 R31 K32 Y33 Q40 C41 D55
BS02	ZN	ee	Q41 C42	Q40 C41

Gene Ontology

--> -->

UnboundLocalError

Python 3.6.8: /usr/bin/python3 Fri Nov 15 18:49:47 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '6d9j', asym_id = 'ee', title = 'Dual tRNA mimicry in the Cricket Paralysis Virus...ected similarity with the Hepatitis C Virus IRES.'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='6d9j', asym_id='ee', title='Dual tRNA mimicry in the Cricket Paralysis Virus...ected similarity with the Hepatitis C Virus IRES.')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0003735,0005840,0006412,0008270', uniprot = '', pdbid = '6d9j', asym_id = 'ee'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412,0008270', uniprot='', pdbid='6d9j', asym_id='ee')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>