Structure of PDB 8qv2 Chain e

Receptor sequence

>8qv2e (length=439) Species: 4932 (Saccharomyces cerevisiae)

GEIITLQAGQCGNHVGKFLWSQLAKEHAIGTDGLSQLPDSSTERDDDTKP
FFRENSRNKFTPRAIMMDSEPSVIADVENTFRGFFDPRNTWVASDGASAG
NSWANGYDIGTRNQDDILNKIDKEIDSTDNFEGFQLLHSVAGGTGSGLGS
NLLEALCDRYPKKILTTYSVFPARSSEVVVQSYNTILALRRLIEDSDATV
VFDNASLLNISGKVFRNPNIDLQHTNQLISTIISSVTNSIRFPSYMYSSM
SSIYSTLIPSPELHFLSPSFTPFTSKGHSSYDVMLDLLDPSNSLVSTAMN
NPTYFNVYNTIIGNVEPRQISRAMTKLQQRIKFPSWSSSAMHVNIGRRSP
YLPLQPNENEVSGMMLSNMSTVVNVFENACNTFDKVFAKGAFLNNYNVGD
LFQSMQNVQDEFAESREVVQSLMEDYVAAEQDSYLDDVL

3D structure

• PDB: 8qv2 Structure of the native gamma-tubulin ring complex capping spindle microtubules.
• Chain: e
• Resolution: 9.2 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	GTP	e	Q12 C13 N103 S141 G144 G145 T146 L224 N228	Q10 C11 N101 S139 G142 G143 T144 L222 N226

Gene Ontology

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UnboundLocalError

Python 3.6.8: /usr/bin/python3 Sat Nov 30 19:50:50 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()

   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)

   1444         else:

=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)

   1446     

   1447     uniprot_line=''

pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '8qv2', asym_id = 'e', title = 'Structure of the native gamma-tubulin ring complex capping spindle microtubules.'

 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='8qv2', asym_id='e', title='Structure of the native gamma-tubulin ring complex capping spindle microtubules.')

    839 

    840     if go:

=>  841         display_go(go,uniprot,pdbid,asym_id)

    842     return pubmed,uniprot

    843 

global display_go = <function display_go>, go = '0000930,0005525,0005874,0007017,0007020,0031122', uniprot = '', pdbid = '8qv2', asym_id = 'e'

 /var/www/html/BioLiP/pdb.cgi in display_go(go='0000930,0005525,0005874,0007017,0007020,0031122', uniprot='', pdbid='8qv2', asym_id='e')

    480         '''.replace("$namespace_link",namespace_link

    481           ).replace("$namespace",namespace

=>  482           ).replace("$uniprot",u

    483         ))

    484         for l,(term,name) in enumerate(go2aspect[Aspect]):

u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>