Structure of PDB 6d90 Chain e

Receptor sequence

>6d90e (length=128) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]

AALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKG
QILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAH
NVSSKNRKAIVERAAQLAIRVTNPNARL

3D structure

PDB

6d90 Dual tRNA mimicry in the Cricket Paralysis Virus IRES uncovers an unexpected similarity with the Hepatitis C Virus IRES.

Chain

Resolution

3.2 Å

3D
structure

Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	e	R5 K15 T17 K18 K19 F20 R22 H23 Q24 D26 R27 Y28 K30 I31 N34 W35 R36 K37 R39 G40 I41 D42 N43 R44 R46 R47 R48 F49 K50 G51 Q52 P56 N57 I58 G59 Y60 G61 S62 N63 K64 K67 H68 L70 L78 E98 A100 H101 S104 A127	R4 K14 T16 K17 K18 F19 R21 H22 Q23 D25 R26 Y27 K29 I30 N33 W34 R35 K36 R38 G39 I40 D41 N42 R43 R45 R46 R47 F48 K49 G50 Q51 P55 N56 I57 G58 Y59 G60 S61 N62 K63 K66 H67 L69 L77 E97 A99 H100 S103 A126

Gene Ontology

	Molecular Function
GO:0003735	structural constituent of ribosome

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

External links

PDB	RCSB:6d90, PDBe:6d90, PDBj:6d90
PDBsum	6d90
PubMed	29856316
UniProt	G1TUN8\|RL32_RABIT Large ribosomal subunit protein eL32 (Gene Name=RPL32)