Structure of PDB 5k0y Chain e

Receptor sequence

>5k0ye (length=126) Species: 9986 (Oryctolagus cuniculus)

MGRVRTKTVKKAARVIIEKYYTRLGNDFHTNKRVCEEIAIIPSKKLRNKI
AGYVTHLMKRIQRGPVRGISIKLQEEERERRDNYVPEVSALDQEIIEVDP
DTKEMLKLLDFGSLSNLQVTQPTVGM

3D structure

• PDB: 5k0y eIF3 Peripheral Subunits Rearrangement after mRNA Binding and Start-Codon Recognition.
• Chain: e
• Resolution: 5.8 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	e	M1 G2 R3 V4 R5 T6 K7 K10 F28 K32 R33 S43 K44 K45 N48 K49 Y53 H56 K59 R60 R63 R67 Q118 V119 Q121 P122 T123	M1 G2 R3 V4 R5 T6 K7 K10 F28 K32 R33 S43 K44 K45 N48 K49 Y53 H56 K59 R60 R63 R67 Q118 V119 Q121 P122 T123

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome

Biological Process

• GO:0006412 translation

Cellular Component

• GO:0005634 nucleus
• GO:0005730 nucleolus
• GO:0005737 cytoplasm
• GO:0005829 cytosol
• GO:0005840 ribosome
• GO:0022626 cytosolic ribosome
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:5k0y, PDBe:5k0y, PDBj:5k0y
• PDBsum: 5k0y
• PubMed: 27373335
• UniProt: G1TU13|RS17_RABIT Small ribosomal subunit protein eS17 (Gene Name=RPS17)