Structure of PDB 3jai Chain e

Receptor sequence

>3jaie (length=128) Species: 9986 (Oryctolagus cuniculus)

AALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKG
QILMPNIGYGSNKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAH
NVSSKNRKAIVERAAQLAIRVTNPNARL

3D structure

• PDB: 3jai Structural basis for stop codon recognition in eukaryotes.
• Chain: e
• Resolution: 3.65 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	e	R5 V8 K14 K15 R16 T17 K18 K19 F20 R22 H23 Q24 D26 R27 Y28 K30 I31 N34 W35 R36 K37 R39 G40 I41 D42 N43 R44 R46 R47 R48 F49 K50 G51 Q52 I53 L54 P56 N57 I58 G59 Y60 G61 S62 N63 K64 K65 K67 H68 P71 K76 N81 K83 E98 A100 H101 N102 S104 S105 K106 N107 N124 A127	R4 V7 K13 K14 R15 T16 K17 K18 F19 R21 H22 Q23 D25 R26 Y27 K29 I30 N33 W34 R35 K36 R38 G39 I40 D41 N42 R43 R45 R46 R47 F48 K49 G50 Q51 I52 L53 P55 N56 I57 G58 Y59 G60 S61 N62 K63 K64 K66 H67 P70 K75 N80 K82 E97 A99 H100 N101 S103 S104 K105 N106 N123 A126

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome

Biological Process

• GO:0006412 translation

Cellular Component

• GO:0005737 cytoplasm
• GO:0005840 ribosome
• GO:0022625 cytosolic large ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:3jai, PDBe:3jai, PDBj:3jai
• PDBsum: 3jai
• PubMed: 26245381
• UniProt: G1TUN8|RL32_RABIT Large ribosomal subunit protein eL32 (Gene Name=RPL32)