Structure of PDB 5lzu Chain dd

Receptor sequence

>5lzudd (length=55) Species: 9986 (Oryctolagus cuniculus)

GHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIG
FIKLD

3D structure

• PDB: 5lzu Decoding Mammalian Ribosome-mRNA States by Translational GTPase Complexes.
• Chain: dd
• Resolution: 3.75 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	dd	G2 H3 L6 Y7 H10 P11 R12 K13 F14 G15 Q16 G17 R19 R22 C24 N26 H28 G29 L30 I31 R32 K33 Y34 N37 R40 Q41 R44 K54 D56	G1 H2 L5 Y6 H9 P10 R11 K12 F13 G14 Q15 G16 R18 R21 C23 N25 H27 G28 L29 I30 R31 K32 Y33 N36 R39 Q40 R43 K53 D55
BS02	ZN	dd	C21 C24 C39 C42	C20 C23 C38 C41

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome
• GO:0008270 zinc ion binding
• GO:0046872 metal ion binding

Biological Process

• GO:0006412 translation

Cellular Component

• GO:0005737 cytoplasm
• GO:0005783 endoplasmic reticulum
• GO:0005791 rough endoplasmic reticulum
• GO:0005829 cytosol
• GO:0005840 ribosome
• GO:0022626 cytosolic ribosome
• GO:0022627 cytosolic small ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:5lzu, PDBe:5lzu, PDBj:5lzu
• PDBsum: 5lzu
• PubMed: 27863242
• UniProt: G1U7M4|RS29_RABIT Small ribosomal subunit protein uS14 (Gene Name=RPS29)