Structure of PDB 5y6p Chain d9

Receptor sequence

>5y6pd9 (length=239) Species: 35689 (Griffithsia pacifica) [Search protein sequence]

VLRSPVPSGAATVYGYVGRGNISVILAKADEYMAKSVRKQYLAKSNPYGT
FGVQCTEGSVKFAADFSRIRALNAEFRAKLGSASKKTFDMYENRKNAISN
SHGCHHEETQFVGYKGVSSMYNVSKSEASGSCSRYASPETVVEAAMLRFM
DIQVKMAANPTGVYNISCNEGAARGQAEDVRVAALNAAFRQGQKSLGKLL
DEKYQQKKQGYSFAHGCNYEEGLINKYPALGAAFRSKSY

3D structure

PDB

5y6p Structure of phycobilisome from the red alga Griffithsia pacifica

Chain

Resolution

3.5 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	PEB	d9	G241 D245 Y248	G197 D201 Y204
BS02	PEB	d9	L229 N230 F233	L185 N186 F189
BS03	PEB	d9	L116 N117 F120	L72 N73 F76
BS04	PUB	d9	L86 F95 C99 E101 R112	L42 F51 C55 E57 R68
BS05	PEB	d9	Y76 M77 S80 H150	Y32 M33 S36 H106
BS06	PEB	d9	F132 Y135	F88 Y91
BS07	PEB	d9	F193 Q197 Y263	F149 Q153 Y219
BS08	PEB	d9	V81 Q84 C148 E151 Q154 V161	V37 Q40 C104 E107 Q110 V117
BS09	PEB	d9	F193 M194 Q197 C261 E264	F149 M150 Q153 C217 E220
BS10	PVN	d9	L86 Q98 S168 E171 A172 C176 S177 R178 Y179	L42 Q54 S124 E127 A128 C132 S133 R134 Y135
BS11	PUB	d9	Y208 C212 E214 A221 R225 L229	Y164 C168 E170 A177 R181 L185

External links

PDB	RCSB:5y6p, PDBe:5y6p, PDBj:5y6p
PDBsum	5y6p
PubMed	29045394

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