Structure of PDB 5y6p Chain d3

Receptor sequence

>5y6pd3 (length=239) Species: 35689 (Griffithsia pacifica) [Search protein sequence]

VLRSPVPSGAATVYGYVGRGNISVILAKADEYMAKSVRKQYLAKSNPYGT
FGVQCTEGSVKFAADFSRIRALNAEFRAKLGSASKKTFDMYENRKNAISN
SHGCHHEETQFVGYKGVSSMYNVSKSEASGSCSRYASPETVVEAAMLRFM
DIQVKMAANPTGVYNISCNEGAARGQAEDVRVAALNAAFRQGQKSLGKLL
DEKYQQKKQGYSFAHGCNYEEGLINKYPALGAAFRSKSY

3D structure

PDB

5y6p Structure of phycobilisome from the red alga Griffithsia pacifica

Chain

Resolution

3.5 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	PEB	d3	L229 N230 F233	L185 N186 F189
BS02	PEB	d3	M190 F193 Y263	M146 F149 Y219
BS03	PEB	d3	M194 Q197 C261 E264	M150 Q153 C217 E220
BS04	PEB	d3	G241 Y248	G197 Y204
BS05	PEB	d3	S128 T131 F132 Y135 K139	S84 T87 F88 Y91 K95
BS06	PEB	d3	L116 N117 F120	L72 N73 F76
BS07	PEB	d3	Y76 K83	Y32 K39
BS08	PEB	d3	Q84 Y85 E151 Y165	Q40 Y41 E107 Y121
BS09	PVN	d3	S111 R114 A115 A118 E171 C176 S177 R178 Y179	S67 R70 A71 A74 E127 C132 S133 R134 Y135
BS10	PUB	d3	K199 Y208 C212 E214 R225 L229	K155 Y164 C168 E170 R181 L185
BS11	PUB	d3	F95 A108 D109 R112	F51 A64 D65 R68

External links

PDB	RCSB:5y6p, PDBe:5y6p, PDBj:5y6p
PDBsum	5y6p
PubMed	29045394

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