Structure of PDB 8d8j Chain d

Receptor sequence

>8d8jd (length=660) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence]

DILAKNLFDRSHSNWAPVIDRLYVSEKRFMDIDSREFSVWLNGTVKYLPF
HSILHLDEMLLEQINGDVVKFNTHMYECIFNNLGNLKPTNFNQDGTNDKV
ILKMKELLERYDKALKITEERINKVPKMTQAILNNCLKYSTKCSSFHDMD
YFITKFRDDYGITPNKQNLTTVIQFYSRKEMTKQAWNTFDTMKFLSTKHF
PDICTYNTMLRICEKERNFPKALDLFQEIQDHNIKPTTNTYIMMARVLAS
SSSNAVVSEGKSDSLRLLGWKYLHELEDKNLYRHKKDDLNLFLAMMALAA
FDGDIELSRALYYLFIAKKYKTLCANWKGNILVDQDTIWKSTLMPEMLNY
LMLAYARFDPRNLPVLSGYEKGIELRRKFLREFDSSMRLKFKLPFLPISD
LNSEAQVLAESNAIWSFNMENGGTRNTLTSSNEAALEDIKKYRQLLDSFA
QEAEDFNEFKFKVMYEVTKMQRESINVNVFNKISLHTYLSIPINLKQQKE
FLRRLTFFTFQQHEFEAVIKRLYEGYRNNLIMHDIWYITCLRHKIMMDTT
LYELVMKAAIEFQNEDLAKKVWNDRGKFRTTVPFLKMDQRIRIAKDQKFA
HLMVEFFTKQGKYSDAIAIILSSKNRFNWTYSMVRNLHKALEEIEDRNSV
EILLDVVNKK

3D structure

PDB

8d8j Principles of mitoribosomal small subunit assembly in eukaryotes.

Chain

Resolution

3.8 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	d	R182 H221 K278 T283 Q284 A285 N288 K292 Q321 T324 T325 Q328 R332 D356 C358 R365 R371 N393 M397 H438 K440 D441 L443 N444 P499 E500 N503 L507 N642 I644 H647 K787 Y820 N847	R35 H74 K124 T129 Q130 A131 N134 K138 Q167 T170 T171 Q174 R178 D202 C204 R211 R217 N239 M243 H284 K286 D287 L289 N290 P345 E346 N349 L353 N481 I483 H486 K598 Y631 N658

Gene Ontology

	Molecular Function
GO:0003729	mRNA binding
GO:0019843	rRNA binding

	Biological Process
GO:0000002	mitochondrial genome maintenance
GO:0000963	mitochondrial RNA processing
GO:0006396	RNA processing
GO:0006397	mRNA processing
GO:0007005	mitochondrion organization
GO:0008380	RNA splicing
GO:0016072	rRNA metabolic process
GO:2000234	positive regulation of rRNA processing

	Cellular Component
GO:0005739	mitochondrion

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Molecular Function

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Biological Process

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Cellular Component

External links

PDB	RCSB:8d8j, PDBe:8d8j, PDBj:8d8j
PDBsum	8d8j
PubMed	36482135
UniProt	P48237\|CCM1_YEAST Mitochondrial 15S rRNA processing factor CCM1 (Gene Name=CCM1)

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