Structure of PDB 7pai Chain d

Receptor sequence

>7paid (length=175) Species: 272634 (Mycoplasmoides pneumoniae M129)

NLKAHYQKTIAKELQKSFAFSSIMQVPRLEKIVINMGVGDAIRDSKFLES
ALNELHLISGQKPVATKAKNAISTYKLRAGQLIGCKVTLRGERMWAFLEK
LIYVALPRVRDFRGLSLKSFDGRGNYTIGIKEQIIFPEIVYDDIKRIRGF
DVTLVTSTNKDSEALALLRALNLPL

3D structure

• PDB: 7pai Visualizing translation dynamics at atomic detail inside a bacterial cell.
• Chain: d
• Resolution: 6.7 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	d	V35 N37 M38 G39 V40 G41 A70 K71 N72 K88 K120 S121 R125 N127 T129 G131 K133 R148 R150 G151 D153	V33 N35 M36 G37 V38 G39 A68 K69 N70 K86 K118 S119 R123 N125 T127 G129 K131 R146 R148 G149 D151
BS02	rna	d	S24 Q27 R30 Q63 K64 V66 A67 T68 T90 R92	S22 Q25 R28 Q61 K62 V64 A65 T66 T88 R90
BS03	rna	d	S75 K78 R80	S73 K76 R78

Gene Ontology

Molecular Function

• GO:0000049 tRNA binding
• GO:0003723 RNA binding
• GO:0003735 structural constituent of ribosome
• GO:0019843 rRNA binding

Biological Process

• GO:0006412 translation

Cellular Component

• GO:0005840 ribosome
• GO:0022625 cytosolic large ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:7pai, PDBe:7pai, PDBj:7pai
• PDBsum: 7pai
• PubMed: 36171285
• UniProt: Q50306|RL5_MYCPN Large ribosomal subunit protein uL5 (Gene Name=rplE)