Structure of PDB 6zoj Chain d

Receptor sequence
>6zojd (length=55) Species: 9606 (Homo sapiens) [Search protein sequence]
GHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIG
FIKLD
3D structure
PDB6zoj SARS-CoV-2 Nsp1 binds the ribosomal mRNA channel to inhibit translation.
Chaind
Resolution2.8 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna d G2 H3 L6 Y7 W8 H10 P11 R12 K13 F14 Q16 G17 R19 R22 C24 N26 H28 I31 R32 Y34 R40 Q41 R44 K54 D56 G1 H2 L5 Y6 W7 H9 P10 R11 K12 F13 Q15 G16 R18 R21 C23 N25 H27 I30 R31 Y33 R39 Q40 R43 K53 D55
BS02 ZN d C21 C24 C42 C20 C23 C41
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0008270 zinc ion binding
GO:0046872 metal ion binding
Biological Process
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005654 nucleoplasm
GO:0005737 cytoplasm
GO:0005783 endoplasmic reticulum
GO:0005791 rough endoplasmic reticulum
GO:0005829 cytosol
GO:0005840 ribosome
GO:0005925 focal adhesion
GO:0015935 small ribosomal subunit
GO:0022626 cytosolic ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:0070062 extracellular exosome
GO:0098556 cytoplasmic side of rough endoplasmic reticulum membrane
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6zoj, PDBe:6zoj, PDBj:6zoj
PDBsum6zoj
PubMed32908316
UniProtP62273|RS29_HUMAN Small ribosomal subunit protein uS14 (Gene Name=RPS29)

[Back to BioLiP]