Structure of PDB 6tmf Chain d

Receptor sequence

>6tmfd (length=582) Species: 2287 (Saccharolobus solfataricus) [Search protein sequence]

MRVAVINYDFCKPDKCNLECINFCPVDRSGGKAIELSEIVKGKPVIYEET
CIGCGICVKKCPYEAISIVNLPDELEGEVIHRYKVNGFKLFGLPTPKNNT
ILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYN
YFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDEVKELL
NMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDAPSSYLDVRERMN
MAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAA
RVGINNFLKGYLPAENMKIRPDEIKFMLKTKMKWTKIIKKLGDFQLVVDN
GEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQR
IFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSG
GELQKLYIAATLAKEADLYVLDAPSSYLDVEERYIVAKAIKRVTRERKAV
TFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLKTGMNEFLRELEV
TFRRDAETGRPRVNKIGSYLDRVQKERGDYYS

3D structure

PDB

6tmf Molecular analysis of the ribosome recycling factor ABCE1 bound to the 30S post-splitting complex.

Chain

Resolution

2.8 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	rna	d	R2 K15 E19 K59 N70 K146 E147 K296 S297 Y298 R301 N305 A314 N316 R565 R574 N576 K577 S580 R584	R2 K15 E19 K59 N70 K146 E147 K296 S297 Y298 R301 N305 A314 N316 R553 R562 N564 K565 S568 R572
BS02	SF4	d	C24 I34 C51 I52 G53 C54 C57	C24 I34 C51 I52 G53 C54 C57
BS03	SF4	d	C11 K12 C16 C20 P44 C61 I66	C11 K12 C16 C20 P44 C61 I66
BS04	ANP	d	Y83 F88 N108 G109 G111 K112 T113 T114 Q167 H269 D459 S461 G462 G463 E464	Y83 F88 N108 G109 G111 K112 T113 T114 Q167 H269 D447 S449 G450 G451 E452
BS05	MG	d	T113 Q167	T113 Q167
BS06	ANP	d	K208 I212 S214 G215 G216 L353 F356 N377 G378 I379 G380 K381 T382 Q411 H518 E538	K208 I212 S214 G215 G216 L341 F344 N365 G366 I367 G368 K369 T370 Q399 H506 E526
BS07	MG	d	T382 Q411	T370 Q399

Gene Ontology

	Molecular Function
GO:0005506	iron ion binding
GO:0005515	protein binding
GO:0005524	ATP binding
GO:0016491	oxidoreductase activity
GO:0016887	ATP hydrolysis activity
GO:0043024	ribosomal small subunit binding
GO:0046872	metal ion binding

	Biological Process
GO:0006413	translational initiation
GO:0006415	translational termination

View graph for
Molecular Function

View graph for
Biological Process

External links

PDB	RCSB:6tmf, PDBe:6tmf, PDBj:6tmf
PDBsum	6tmf
PubMed	32064661
UniProt	Q980K5

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