Structure of PDB 4d5l Chain d

Receptor sequence
>4d5ld (length=53) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence]
QQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFI
KLD
3D structure
PDB4d5l Cryo-Em of Ribosomal 80S Complexes with Termination Factors Reveals the Translocated Cricket Paralysis Virus Ires.
Chaind
Resolution9.0 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna d Q4 Q5 Y7 S9 H10 F14 G17 C24 N26 R27 H28 L30 K33 Y34 R40 Q41 C42 R44 K54 L55 D56 Q1 Q2 Y4 S6 H7 F11 G14 C21 N23 R24 H25 L27 K30 Y31 R37 Q38 C39 R41 K51 L52 D53
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0008270 zinc ion binding
GO:0046872 metal ion binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005783 endoplasmic reticulum
GO:0005791 rough endoplasmic reticulum
GO:0005829 cytosol
GO:0005840 ribosome
GO:0022626 cytosolic ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Cellular Component
External links
PDB RCSB:4d5l, PDBe:4d5l, PDBj:4d5l
PDBsum4d5l
PubMed25601755
UniProtG1U7M4|RS29_RABIT Small ribosomal subunit protein uS14 (Gene Name=RPS29)

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