Structure of PDB 5y6p Chain c8

Receptor sequence

>5y6pc8 (length=245) Species: 35689 (Griffithsia pacifica) [Search protein sequence]

VLRTVLRSPVPSGAATVYGYVGRGNISVILAKADEYMAKSVRKQYLAKSN
PYGTFGVQCTEGSVKFAADFSRIRALNAEFRAKLGSASKKTFDMYENRKN
AISNSHGCHHEETQFVGYKGVSSMYNVSKSEASGSCSRYASPETVVEAAM
LRFMDIQVKMAANPTGVYNISCNEGAARGQAEDVRVAALNAAFRQGQKSL
GKLLDEKYQQKKQGYSFAHGCNYEEGLINKYPALGAAFRSKSYGY

3D structure

PDB

5y6p Structure of phycobilisome from the red alga Griffithsia pacifica

Chain

Resolution

3.5 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	PEB	c8	F193 Q197 Y263	F153 Q157 Y223
BS02	PEB	c8	L229 F233	L189 F193
BS03	PEB	c8	Y76 S80 H150	Y36 S40 H110
BS04	PEB	c8	G241 Y248	G201 Y208
BS05	PEB	c8	L116 N117 F120	L76 N77 F80
BS06	PEB	c8	M77 Q84 C148 E151 F155	M37 Q44 C108 E111 F115
BS07	PEB	c8	M194 Q197 G260 C261 E264	M154 Q157 G220 C221 E224
BS08	PVN	c8	L86 S89 Q98 E171 C176 R178 Y179	L46 S49 Q58 E131 C136 R138 Y139
BS09	PUB	c8	Y208 C212 E214 R225 L229	Y168 C172 E174 R185 L189
BS10	PUB	c8	L86 F95 E101 A108 R112 L116	L46 F55 E61 A68 R72 L76

External links

PDB	RCSB:5y6p, PDBe:5y6p, PDBj:5y6p
PDBsum	5y6p
PubMed	29045394

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