Structure of PDB 9c4g Chain c

Receptor sequence

>9c4gc (length=274) Species: 1747 (Cutibacterium acnes) [Search protein sequence]

GIRKYKPTTPGRRGSSVSDFVELTRSTPEKSLLVAKPKTGGRNNTGRITT
RHIGGGHKQAYRIIDFKRYDKDGVPAKVAHIEYDPNRTARIALLHYADGE
KRYIIAPDGVGQGTVVVSGPEADIKPGNNLPLRNIPVGTTVHAVELRPGG
GAKMGRSAGASVQLVAREGKYATVRLPSGEMRMVDIRCRATIGEVGNAEQ
ININWGKAGRNRWKGIRPTVRGVVMNPIDHPHGGGEGRTSGGRHPVSPWG
KPEGRTRNKKKASSRLIVRRRKSG

3D structure

PDB

9c4g Mechanistic basis for the translation inhibition of Cutibacterium acnes by Clindamycin.

Chain

Resolution

2.53 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	c	R4 K7 P8 T9 T10 P11 R13 R14 F21 K31 A36 P38 K39 T40 G42 R43 N44 N45 T46 G47 R48 I49 T50 T51 R52 G56 H58 K59 Q60 A61 Y62 R63 K68 Y84 P86 N87 R88 A98 D99 G100 K102 L147 R148 G150 G151 K154 M155 G156 R157 S158 A159 K171 Y172 L177 P178 S179 E181 R183 R188 A199 Q201 I202 N205 W206 G207 K208 A209 G210 R211 N212 R213 W214 R218 P219 T220 V221 R222 G223 V224 V225 M226 N227 P228 I229 D230 H231 H233 G235 G236 E237 G238 R239 T240 S241 G243 R244 H245 P246 P249 W250 E254 G255 R256 T257 R258 K261 K262 S264 R266 R270 R271 S274	R3 K6 P7 T8 T9 P10 R12 R13 F20 K30 A35 P37 K38 T39 G41 R42 N43 N44 T45 G46 R47 I48 T49 T50 R51 G55 H57 K58 Q59 A60 Y61 R62 K67 Y83 P85 N86 R87 A97 D98 G99 K101 L146 R147 G149 G150 K153 M154 G155 R156 S157 A158 K170 Y171 L176 P177 S178 E180 R182 R187 A198 Q200 I201 N204 W205 G206 K207 A208 G209 R210 N211 R212 W213 R217 P218 T219 V220 R221 G222 V223 V224 M225 N226 P227 I228 D229 H230 H232 G234 G235 E236 G237 R238 T239 S240 G242 R243 H244 P245 P248 W249 E253 G254 R255 T256 R257 K260 K261 S263 R265 R269 R270 S273

External links

PDB	RCSB:9c4g, PDBe:9c4g, PDBj:9c4g
PDBsum	9c4g
PubMed	39122144
UniProt	A0A2B7JMV5

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