Structure of PDB 8wmj Chain c

Receptor sequence

>8wmjc (length=170) Species: 52970 (Rhodomonas salina)

DFSAAVPFLKRPSNLDGAYIGDVGFDPLGFSDVFDLRVLREAELKHGRFA
MLAVLGFIVQELYTFPFFPKMAPVDAHDYFVKQGGGSQIIFWISFVELFG
VVALFETLQGKREPGDFAFDPLGLAKDEATLERYRLAEVKHARLAMIAIG
GFIHQYWVTKQTVLEQLGNF

3D structure

• PDB: 8wmj Growth phase-dependent reorganization of cryptophyte photosystem I antennae.
• Chain: c
• Resolution: 3.0 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	CLA	c	A47 V48 P49 V65	A5 V6 P7 V23
BS02	CLA	c	L57 D64 V65 F67 D68 F72 S73 L81 R82 E85 R185 M188 I189	L15 D22 V23 F25 D26 F30 S31 L39 R40 E43 R143 M146 I147
BS03	CLA	c	A84 H88	A42 H46
BS04	CLA	c	L94 A95 G98 V101 Q102 Y105 T106 F107 F110 F122	L52 A53 G56 V59 Q60 Y63 T64 F65 F68 F80
BS05	CLA	c	F110 Q125 G127 Q130 I131 W134	F68 Q83 G85 Q88 I89 W92
BS06	CLA	c	H119 V123 G128 I131 I132	H77 V81 G86 I89 I90
BS07	CLA	c	V80 E83 A84 K87 H88 F91 I135 S136 E139 V143 L146	V38 E41 A42 K45 H46 F49 I93 S94 E97 V101 L104
BS08	CLA	c	R90 M93 L94 D158 F159 F161 L166 Y176 R177 E180 H183	R48 M51 L52 D116 F117 F119 L124 Y134 R135 E138 H141
BS09	CLA	c	R175 A179 K182 H183	R133 A137 K140 H141
BS10	KC2	c	R175 Y176 H183	R133 Y134 H141
BS11	CLA	c	I189 G193 H196 Q197 V200 Q208	I147 G151 H154 Q155 V158 Q166
BS12	CLA	c	H196 W199	H154 W157
BS13	II0	c	F161 D162 P163 L164 L186 A190 F194 Q197 L209	F119 D120 P121 L122 L144 A148 F152 Q155 L167
BS14	II0	c	F67 D68 P69 L70 H88 F91 A95 F99 Q102 P115 M188 I191	F25 D26 P27 L28 H46 F49 A53 F57 Q60 P73 M146 I149
BS15	II0	c	K182 L186 I189	K140 L144 I147
BS16	IHT	c	H119 I191 G192 I195 H196 W199	H77 I149 G150 I153 H154 W157
BS17	II0	c	F91 L94 F109 F110 I135 V138 F159	F49 L52 F67 F68 I93 V96 F117
BS18	CLA	c	F141 F161	F99 F119
BS19	IHT	c	Q130 F133 W134	Q88 F91 W92
BS20	IHT	c	F133 F137	F91 F95

External links

• PDB: RCSB:8wmj, PDBe:8wmj, PDBj:8wmj
• PDBsum: 8wmj
• PubMed: 38734819