Structure of PDB 8wa1 Chain c

Receptor sequence
>8wa1c (length=1176) Species: 4097 (Nicotiana tabacum) [Search protein sequence]
NLVFHNKAINGTAMKRLISRLIDHFGMAYTSHILDQVKTLGFQQATATSI
SLGIDDLLTIPSKGWLVQDAEQQSLILEKHHHYGNVHAVEKLRQSIEIWY
ATSEYLRQEMNPNFRMTDPFNPVHIMSFSGARGNASQVHQLVGMRGLMSD
PQGQMIDLPIQSNLREGLSLTEYIISCYGARKGVVDTAVRTSDAGYLTRR
LVEVVQHIVVRRTDCGTARGISVSPRNGMMPERIFIQTLIGRVLADDIYM
GPRCIATRNQDIGIGLVNRFITFRAQPISIRTPFTCRSTSWICRLCYGRS
PTHGDLVELGEAVGIIAGQSIGEPGTQAEHVRAPSNGKIKFNEDLVHPTR
TRHGHPAFLCSIDLYVTIESEDILHNVNIPPKSLLLVQNDQYVESEQVIA
EIRAGISTLNFKEKVRKHIYSDSDGEMHWSTDVYHAPEFTYGNVHLLPKT
SHLWILLGRPCRSSLVYLSIHKDQDQMNSPILHENSDLLSKRRRNKFIIP
LHISIEIPVNGIFRRNSILAYFDDPRYRRKSSGIIKDRFFFIPEEVHILP
GSSSIMVRNNSIVGVDTQITLNLRSRVGGLVRVERKKKRIELKIFSGDIH
FPGETDKISRHTGVLIPPGTGKRNSKESKKVKNWIYVQRITPSKKKFFVL
VRPVVTYEITDGINLATLFPPDPLQERDNVQLRIVNYILYGNGKPIRGIS
DTSIQLVRTCLVLNWNQDKKSSSCEEARASFVEIRTNGLIRHFLRINLVK
SPISYIGKRNDPSGSGLLSDNGSDCTNINPFSSIYSYSKAKIQQSINQPQ
GTIHTLLNRNKECQSLIILSAANCSRMGPFKSLGPLGTSLPIENFYSSYH
LITHNQILVTNYLQLDNLKQTFQVIKFKYYLMDENGKIFNPDPCRNIILN
PFNLNWYFLHHNYCEETSKIISLGQFICENVCIAKNGPPLKSGQVILVQV
DSIVIRSAKPYLATPGATVHGHYGETLYEGDTLVTFIYEKGLPKVEQVLE
VRSVDSISMNLEKRIEGWNKCITRILGIPWGFLIGAELTIAQSRISLVNK
IQQVYRSQGVQIHNRHLEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRA
ERMGRALEEAICYRVVLLGITRASLNTQSFISEASFQETARVLAKAALRG
RIDWLKGLKENVVLGGVIPVGTGFKG
3D structure
PDB8wa1 Cryo-EM structures of the plant plastid-encoded RNA polymerase.
Chainc
Resolution2.8 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 2.7.7.6: DNA-directed RNA polymerase.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 dna c T196 S197 Y201 T191 S192 Y196
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003899 DNA-directed 5'-3' RNA polymerase activity
GO:0008270 zinc ion binding
GO:0016779 nucleotidyltransferase activity
GO:0034062 5'-3' RNA polymerase activity
GO:0046872 metal ion binding
Biological Process
GO:0006351 DNA-templated transcription
Cellular Component
GO:0000428 DNA-directed RNA polymerase complex
GO:0009507 chloroplast

View graph for
Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8wa1, PDBe:8wa1, PDBj:8wa1
PDBsum8wa1
PubMed38428393
UniProtP38550|RPOC2_TOBAC DNA-directed RNA polymerase subunit beta'' (Gene Name=rpoC2)

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