Structure of PDB 8eqm Chain c

Receptor sequence
>8eqmc (length=453) Species: 91464 (Synechococcus sp. PCC 7335) [Search protein sequence]
PGYDEATSGYAWWAGNARLITPELTGRFLGAHVAHAGLVALWAGGMLLFE
VSHFNLSKPMYEQGCILMPHIATLGIGVGQSGEITSMFPFFAIGVAHLIG
SAVLGIGGMYHAIKGPEKLYGFFQFDWTDRAKVAQILGFHIAILGIFALL
FAAKAMYWGGLYDPWAPGGGDVRLVTNPTLDPRIIFGYLIKRPTGGEGWI
VSVNNLEDIIGGHIWIGCILIAGGIWHILVPPLRWTYNLFPWTGETYLSQ
SLGNVAGQAFIAAAFIWFNNTAYPSVFYGPTVPESSQAQSFVFLMRDQGM
GADVASAQGPTGLGKYLQRSPTGEIIFGGETMRFWDARAPWLEPLRGKNG
LDLDKLQHDVQPWQLRRAAEYMTHSPIGSLNSVAGLATESNAFNYVSPRT
WLASAHFIFGFFFLVGHLWHAGRARAAAAGFETGLDREDEPVLSMAPIDP
SLR
3D structure
PDB8eqm Structure of a dimeric photosystem II complex from a cyanobacterium acclimated to far-red light.
Chainc
Resolution2.6 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CLA c T100 F174 A175 F178 H240 I243 G284 Q285 I288 F292 A299 Y300 T73 F147 A148 F151 H213 I216 G257 Q258 I261 F265 A272 Y273
BS02 CLA c W69 H97 F174 K181 Q285 A289 Y300 H433 F436 F440 W42 H70 F147 K154 Q258 A262 Y273 H406 F409 F413
BS03 CLA c V66 A67 A70 L94 L101 H124 Q285 V39 A40 A43 L67 L74 H97 Q258
BS04 CLA c W69 M73 F76 G91 I93 L407 W428 L429 W42 M46 F49 G64 I66 L380 W401 L402
BS05 CLA c S276 Q277 G280 N281 L441 H444 L445 A448 R452 S249 Q250 G253 N254 L414 H417 L418 A421 R425
BS06 CLA c L164 I168 I246 A249 G250 W253 H254 P258 P259 L260 W262 T263 L137 I141 I219 A222 G223 W226 H227 P231 P232 L233 W235 T236
BS07 F6C c V160 A161 L164 H167 I168 L171 F267 W269 Y274 Q277 S278 N281 V133 A134 L137 H140 I141 L144 F240 W242 Y247 Q250 S251 N254
BS08 CLA c W40 A41 G42 N43 A44 L275 L279 F439 F440 G443 W446 H447 R450 W13 A14 G15 N16 A17 L248 L252 F412 F413 G416 W419 H420 R423
BS09 CLA c N43 I47 F55 A58 H59 H62 F152 W154 H167 G271 E272 Y274 L275 S278 N16 I20 F28 A31 H32 H35 F125 W127 H140 G244 E245 Y247 L248 S251
BS10 CLA c N43 H62 L65 V66 W69 F439 F440 N16 H35 L38 V39 W42 F412 F413
BS11 CLA c Y30 G42 N43 R45 L46 L51 R54 A58 I140 Y3 G15 N16 R18 L19 L24 R27 A31 I113
BS12 CLA c H59 V60 F149 F150 I163 F166 H167 I170 H32 V33 F122 F123 I136 F139 H140 I143
BS13 CLA c L56 V60 V130 L131 G134 H138 P143 F150 L29 V33 V103 L104 G107 H111 P116 F123
Gene Ontology
Molecular Function
GO:0016168 chlorophyll binding
GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
GO:0046872 metal ion binding
Biological Process
GO:0009767 photosynthetic electron transport chain
GO:0009772 photosynthetic electron transport in photosystem II
GO:0015979 photosynthesis
GO:0019684 photosynthesis, light reaction
Cellular Component
GO:0005737 cytoplasm
GO:0009521 photosystem
GO:0009523 photosystem II
GO:0009579 thylakoid
GO:0016020 membrane
GO:0031676 plasma membrane-derived thylakoid membrane
GO:0042651 thylakoid membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8eqm, PDBe:8eqm, PDBj:8eqm
PDBsum8eqm
PubMed36549647
UniProtB4WKI2

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