Structure of PDB 8c29 Chain c

Receptor sequence
>8c29c (length=433) Species: 3329 (Picea abies) [Search protein sequence]
AGRDQETTGFAWWAGNARLINLSGKLLGAHVAHAGLIVFWAGAMNLFEVA
HFVPEKPMYEQGLILLPHLATLGWGVGPGGEIVDTFPYFVSGVLHLISSA
VLGFGGIYHALIGPETLEESFPFFGYVWKDRNKMTTILGIHLILLGVGAF
LLVLKALYFGGVYDTWAPGGGDVRKITNPTLNPSAIFGYLLKSPFGGEGW
IVSVDNLEDVIGGHVWLGSICIFGGIWHILTKPFAWARRAFVWSGEAYLS
YSLAALSLFGFIACCFVWFNNTAYPSEFYGPTGPEASQAQAFTFLVRDQR
LGASVGSAQGPTGLGKYLMRSPTGEIIFGGETMRFWDLRAPWLEPLRGPN
GLDLSKLRKDIQPWQERRSAEYMTHAPNYVSPRSWLATSHFVLGFFLFVG
HLWHAGRARAAAAGFEKGIDRDFEPVLSMTPLN
3D structure
PDB8c29 Cryo-EM structure of a plant photosystem II supercomplex with light-harvesting protein Lhcb8 and alpha-tocopherol.
Chainc
Resolution2.785 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CLA c A172 L175 H237 L240 F282 A296 Y297 A149 L152 H214 L217 F259 A273 Y274
BS02 CLA c W63 H91 K178 F182 L279 L426 H430 L433 L437 W40 H68 K155 F159 L256 L386 H390 L393 L397
BS03 CLA c V61 A64 N68 H91 L92 H118 V38 A41 N45 H68 L69 H95
BS04 CLA c W63 M67 F70 G85 I87 W425 S429 F436 W40 M44 F47 G62 I64 W385 S389 F396
BS05 CLA c Y274 A277 F438 H441 A445 R449 Y251 A254 F398 H401 A405 R409
BS06 CLA c L161 L165 L213 I243 G247 W250 H251 K255 P256 F257 W259 F264 L138 L142 L190 I220 G224 W227 H228 K232 P233 F234 W236 F241
BS07 CLA c M157 L161 L168 F264 W266 Y271 Y274 A278 F282 M134 L138 L145 F241 W243 Y248 Y251 A255 F259
BS08 CLA c W36 A37 N39 A40 L272 L276 F436 G440 W443 H444 R447 W13 A14 N16 A17 L249 L253 F396 G400 W403 H404 R407
BS09 CLA c N39 L49 H53 H56 Y149 Y271 L272 S275 N16 L26 H30 H33 Y126 Y248 L249 S252
BS10 CLA c H56 L59 I60 W63 H33 L36 I37 W40
BS11 CLA c G25 G38 N39 R41 L42 K48 A52 I130 G2 G15 N16 R18 L19 K25 A29 I107
BS12 CLA c H53 F147 Y149 I163 H164 L167 H30 F124 Y126 I140 H141 L144
BS13 CLA c L50 V124 G128 Y131 H132 L140 F144 L27 V101 G105 Y108 H109 L117 F121
BS14 MG c N155 T158 T159 I252 T254 N132 T135 T136 I229 T231
BS15 LNL c F146 I163 F123 I140
BS16 LNL c W97 P110 L117 H118 S121 W74 P87 L94 H95 S98
BS17 LNL c W250 L253 W227 L230
BS18 LNL c F173 L177 L180 F150 L154 L157
BS19 CLA c F109 L117 F86 L94
BS20 VIV c L204 N205 W239 S242 F246 L181 N182 W216 S219 F223
BS21 CLA c F246 G247 F223 G224
Gene Ontology
Molecular Function
GO:0016168 chlorophyll binding
GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
GO:0046872 metal ion binding
Biological Process
GO:0009767 photosynthetic electron transport chain
GO:0009772 photosynthetic electron transport in photosystem II
GO:0015979 photosynthesis
GO:0019684 photosynthesis, light reaction
Cellular Component
GO:0005737 cytoplasm
GO:0009507 chloroplast
GO:0009521 photosystem
GO:0009523 photosystem II
GO:0009535 chloroplast thylakoid membrane
GO:0009579 thylakoid
GO:0016020 membrane

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Molecular Function
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Cellular Component
External links
PDB RCSB:8c29, PDBe:8c29, PDBj:8c29
PDBsum8c29
PubMed37550369
UniProtR4ZGZ0

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