Structure of PDB 5y6p Chain b3

Receptor sequence
>5y6pb3 (length=374) Species: 35689 (Griffithsia pacifica) [Search protein sequence]
RVLDGLDTVTQDSYSFSRYVLGPFQPSVLNANSSEYEREIAIRAAYRHVF
GNAYIMEEELAEVEVTASQYKLGNLTAKEFIRALAKSSAYKTRFFEGASQ
YRFVELNFMHLLGRAPDTQEEVATHMNIYHAKGFDAEIDSYIDSEEYDSV
FGDYNVPFLRFRGAYTPCDSFNKQCALKGGWANSDKAMGGAALSGYNGSD
GRQMCDRISAYVTSDTTDYESVAGNSPLLTTSPNWLAYPDPAIAPTPAFI
SPQEVREARARVEKLREAYNEEIAKTQARKNAMAPFRAMVEDMAPMLDRG
VTFGDPMLVHPEAKLPENESALADLGGKSSDYKRFWSTMETNTVSRLERD
LEEAKAELRVLEKGVDALTPMSTS
3D structure
PDB5y6p Structure of phycobilisome from the red alga Griffithsia pacifica
Chainb3
Resolution3.5 Å
3D
structure
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Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 PEB b3 G210 A211 Y212 T213 F218 W282 G163 A164 Y165 T166 F171 W235
BS02 PEB b3 Y101 A229 S231 Y54 A182 S184
BS03 PEB b3 Q147 Y148 A170 Q100 Y101 A123
BS04 PEB b3 V112 S115 Q116 L119 V65 S68 Q69 L72
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Fri Feb 21 22:55:14 2025

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '5y6p', asym_id = 'b3', title = 'Structure of phycobilisome from the red alga Griffithsia pacifica'
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='5y6p', asym_id='b3', title='Structure of phycobilisome from the red alga Griffithsia pacifica')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0015979,0030089', uniprot = '', pdbid = '5y6p', asym_id = 'b3'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0015979,0030089', uniprot='', pdbid='5y6p', asym_id='b3')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>