Structure of PDB 8wb4 Chain b

Receptor sequence
>8wb4b (length=504) Species: 173977 (Chroomonas placoidea) [Search protein sequence]
GLPWYRVHTVVLNDPGRLIAVHLMHTALVAGWAGSMALYELAVFDPSDPV
LNPMWRQGMFVMPFMARIGVTDSWGGWSVTGESVANPGFWSFEGVALAHI
GLSGLLFLAAVWHWVYWDLELFRDPRTGNPALDLPKIFGIHLLLSGVLCF
GFGAFHVTGAWGPGIWVSDAYGITGKVQPVAPAWGAEGFNPFNPSGVASH
HIAAGILGFLAGIFHIAVRPPQRLYRALRMGNIETVLSSSIAAVFWSAFI
TTGTMWYGSATTPIELFGPTRYQWDSGYFQQEIERRVENSLNEGLNLSEA
WSRIPDKLAFYDYIGNNPAKGGLFRAGPMNKGDGIAEAWLGHPIFQDKEG
KELTVRRMPAFFETFPVILVDKDGIIRADIPFRRAESKYSIEQVGVTVSF
YGGKLNGQVFKDAPTVKKYARKAQLGEVLEFDRTTLESDGVFRSSPRGWY
TFGHANFALLFFLGHLWHGSRTLFRDVFSGIGAEVTEQVEFGAFQKLGDR
STKK
3D structure
PDB8wb4 Structure and distinct supramolecular organization of a PSII-ACPII dimer from a cryptophyte alga Chroomonas placoidea.
Chainb
Resolution2.47 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 8CT b M25 L29 W115 M24 L28 W114
BS02 CLA b W185 G186 F190 W184 G185 F189
BS03 CLA b W185 G189 F190 G197 H201 A204 L208 W247 F250 I251 W184 G188 F189 G196 H200 A203 L207 W246 F249 I250
BS04 CLA b R68 I69 S146 C150 F153 H201 H202 W247 S248 T252 T262 R67 I68 S145 C149 F152 H200 H201 W246 S247 T251 T261
BS05 CLA b W33 F61 F65 R68 L149 S248 A249 T252 Y451 H455 F458 F462 W32 F60 F64 R67 L148 S247 A248 T251 Y450 H454 F457 F461
BS06 CLA b T27 V30 W33 A34 V62 M66 R68 H100 L103 T26 V29 W32 A33 V61 M65 R67 H99 L102
BS07 CLA b I69 V71 W91 A99 L103 L106 G152 F153 F156 H157 W162 P164 I68 V70 W90 A98 L102 L105 G151 F152 F155 H156 W161 P163
BS08 CLA b W33 M37 Y40 G59 F61 G328 P329 P447 W450 Y451 W32 M36 Y39 G58 F60 G327 P328 P446 W449 Y450
BS09 CLA b S239 A243 W247 F463 H466 L467 L474 S238 A242 W246 F462 H465 L466 L473
BS10 CLA b F139 A212 F215 H216 P221 L229 F138 A211 F214 H215 P220 L228
BS11 CLA b F139 H142 M231 V237 S240 A244 F138 H141 M230 V236 S239 A243
BS12 CLA b W5 Y6 R7 V8 H9 T10 L238 I242 L461 F462 G465 W468 H469 R472 W4 Y5 R6 V7 H8 T9 L237 I241 L460 F461 G464 W467 H468 R471
BS13 CLA b H9 L19 V22 H23 H26 I234 V237 L238 S241 H8 L18 V21 H22 H25 I233 V236 L237 S240
BS14 CLA b H9 H26 V30 W33 F462 H8 H25 V29 W32 F461
BS15 CLA b V8 H9 M25 L29 W115 V7 H8 M24 L28 W114
BS16 CLA b I20 H23 L24 I138 I141 H142 L145 I19 H22 L23 I137 I140 H141 L144
BS17 CLA b I20 L24 A110 W113 H114 L120 L122 I19 L23 A109 W112 H113 L119 L121
BS18 8CT b L29 G32 W33 G105 L28 G31 W32 G104
BS19 8CT b L106 L109 V112 W113 L105 L108 V111 W112
Gene Ontology
Molecular Function
GO:0016168 chlorophyll binding
Biological Process
GO:0015979 photosynthesis
Cellular Component
GO:0009523 photosystem II
GO:0009536 plastid
GO:0009579 thylakoid
GO:0016020 membrane
GO:0042651 thylakoid membrane

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8wb4, PDBe:8wb4, PDBj:8wb4
PDBsum8wb4
PubMed38806516
UniProtA0A222AIE3

[Back to BioLiP]