Structure of PDB 8jjr Chain b

Receptor sequence
>8jjrb (length=659) Species: 2950 (Symbiodinium sp.) [Search protein sequence]
NGRCATSRYLQVMGSIHDIESYFALDNTLSLNLQIFTAHWGHLAIILMWI
SGNLYHIASNANYSLWIKNPIPSMPIAHNIWDPHFTSSTSTPYSHTTTAA
VLIAYSGIYNQLYTSGFSTVNQIYKATFAFSCLAVISILLAKIHIRTHSE
VLHNSATHASQIPSFFQLLYFLDVGISSINIRLNFHTGVLVGFFSIAYTG
HLLDVAIPASRAPLSHTSLSYLTFFGGLKSDTASLYLTDIAHHHLAIGVI
FVYIGHLYSSCSTALGTYIRDMLYTSAIYMFQIKSLHLALSLALAGCAVL
TSATAQHIYSLTPYFYLSYDYVTSVTLYVHHSYIASFLAIASHAHAAITL
VRDWVAPLELESSCTIARIHTHKAAIISHLSWVSLWLGFHTLAIYSHNDT
NMAFGSPSKQILIEPTNAQLIQESSGKALYSFAINSFGSFIYPIGPGDLY
VHHAIALGLHVTVLILLKGALEARGSKLMPDKMEHSFGFSCDGPGRGGTC
DISAWDCFYLAMFWMLNTNAWIDFYFHYKYLAPRQFSESSTYLESWFRDY
LWFNSAPLIRAYSALGTNDLSVQAWFFLLTHLAWATGFMFLISWRGYWQE
LIDIILYMHLKTPILIDLWNGGVYTPLALSIVQARFIGLVHFTAGLILTY
PPFIISTTS
3D structure
PDB8jjr Architecture of symbiotic dinoflagellate photosystem I-light-harvesting supercomplex in Symbiodinium.
Chainb
Resolution2.8 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Interaction with ligand
Site
#
Ligand Ligand
chain
Binding residues on receptor
(original residue number in PDB)
Binding residues on receptor
(residue number reindexed from 1)
Binding affinity
BS01 CLA b H382 W385 H379 W382
BS02 CLA b F188 C264 F185 C261
BS03 CLA b F557 W562 F547 W552
BS04 CLA b S387 L388 G391 F392 I475 F523 W524 S384 L385 G388 F389 I465 F513 W514
BS05 CLA b S399 W524 N527 W531 L553 F557 W594 S396 W514 N517 W521 L543 F547 W584
BS06 CLA b S381 S384 W385 L388 S378 S381 W382 L385
BS07 CLA b W585 L588 H591 L592 A595 W575 L578 H581 L582 A585
BS08 SF4 b C501 G503 P504 C510 W604 C491 G493 P494 C500 W594
BS09 CLA b H619 T622 L625 H609 T612 L615
BS10 CLA b V461 W531 L553 W556 S565 F587 H591 W594 L656 T659 Y660 F663 V451 W521 L543 W546 S555 F577 H581 W584 L646 T649 Y650 F653
BS11 CLA b A595 T596 F598 M599 I602 Y607 W608 A585 T586 F588 M589 I592 Y597 W598
BS12 CLA b H20 Y25 A41 I48 H17 Y22 A38 I45
BS13 CLA b H20 I22 I38 A41 H42 H45 L46 L293 A296 G299 C300 L303 H17 I19 I35 A38 H39 H42 L43 L290 A293 G296 C297 L300
BS14 CLA b H20 H45 W52 F340 H17 H42 W49 F337
BS15 CLA b M51 G55 Y58 H59 N82 W84 M48 G52 Y55 H56 N79 W81
BS16 CLA b N56 A80 H81 L105 A107 Y108 S109 N53 A77 H78 L102 A104 Y105 S106
BS17 CLA b I83 W84 D85 H87 F88 V582 I80 W81 D82 H84 F85 V572
BS18 CLA b F39 W43 L143 H147 T150 H151 F36 W40 L140 H144 T147 H148
BS19 CLA b F39 H42 W43 L46 G178 I179 R185 F188 H189 V192 L193 L303 F36 H39 W40 L43 G175 I176 R182 F185 H186 V189 L190 L300
BS20 CLA b G119 F120 A129 A132 F133 F197 A200 Y201 H204 D207 V208 G116 F117 A126 A129 F130 F194 A197 Y198 H201 D204 V205
BS21 CLA b I199 G203 L206 H219 T220 I196 G200 L203 H216 T217
BS22 CLA b F227 H245 H246 H310 L314 L432 F447 F450 F224 H242 H243 H307 L311 L429 F437 F440
BS23 CLA b V194 F197 S198 Y201 I243 H246 H247 I250 T307 I311 P316 Y317 V191 F194 S195 Y198 I240 H243 H244 I247 T304 I308 P313 Y314
BS24 CLA b Y256 H259 L260 L268 G269 T270 Y253 H256 L257 L265 G266 T267
BS25 CLA b W52 V332 H333 Y336 I337 I657 L658 P661 W49 V329 H330 Y333 I334 I647 L648 P651
BS26 CLA b G110 F197 T304 T307 I311 Y317 L330 H333 H334 G107 F194 T301 T304 I308 Y314 L327 H330 H331
BS27 CLA b M16 G17 S18 D21 L293 A344 H348 I351 R355 F497 F518 F646 V650 L658 M13 G14 S15 D18 L290 A341 H345 I348 R352 F487 F508 F636 V640 L648
BS28 CLA b R371 I372 H375 I379 H382 R368 I369 H372 I376 H379
BS29 CLA b A396 H400 T403 K412 I414 A393 H397 T400 K409 I411
BS30 CLA b I379 L383 V386 H470 I376 L380 V383 H460
BS31 CLA b W389 L390 P418 T419 N420 A421 L459 H462 H463 W386 L387 P415 T416 N417 A418 L449 H452 H453
BS32 CLA b T9 Y12 H619 W629 Y634 P636 T6 Y9 H609 W619 Y624 P626
BS33 CLA b L592 F600 F646 V650 H651 L582 F590 F636 V640 H641
BS34 CLA b N187 F188 F196 G258 H259 Y261 S263 L268 N184 F185 F193 G255 H256 Y258 S260 L265
BS35 CLA b W84 P86 H87 W81 P83 H84
BS36 CLA b W385 W389 F392 H393 W382 W386 F389 H390
BS37 PQN b Y12 F600 S603 W604 R605 W608 A638 L639 A644 Y9 F590 S593 W594 R595 W598 A628 L629 A634
BS38 DD6 b V252 V255 H259 V249 V252 H256
BS39 CLA b L225 F227 H245 L248 A249 V252 L222 F224 H242 L245 A246 V249
BS40 CLA b D274 M275 D271 M272
Gene Ontology
--> -->
 
 
UnboundLocalError
Python 3.6.8: /usr/bin/python3
Fri Nov 29 10:45:14 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1443                 pubmed=display_regular_ligand(pdbid,asym_id,lig3,ligIdx,title)
   1444         else:
=> 1445             pubmed,uniprot=display_protein_receptor(pdbid,asym_id,title)
   1446     
   1447     uniprot_line=''
pubmed = '', uniprot = '', display_protein_receptor = <function display_protein_receptor>, pdbid = '8jjr', asym_id = 'b', title = 'Architecture of symbiotic dinoflagellate photosy... I-light-harvesting supercomplex in Symbiodinium.'
 /var/www/html/BioLiP/pdb.cgi in display_protein_receptor(pdbid='8jjr', asym_id='b', title='Architecture of symbiotic dinoflagellate photosy... I-light-harvesting supercomplex in Symbiodinium.')
    839 
    840     if go:
=>  841         display_go(go,uniprot,pdbid,asym_id)
    842     return pubmed,uniprot
    843 
global display_go = <function display_go>, go = '0009579,0015979,0016020', uniprot = '', pdbid = '8jjr', asym_id = 'b'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0009579,0015979,0016020', uniprot='', pdbid='8jjr', asym_id='b')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>