Structure of PDB 8etg Chain b

Receptor sequence
>8etgb (length=378) Species: 4896 (Schizosaccharomyces pombe) [Search protein sequence]
TPIPDVNTFLDVVLSRTQRKTPTVIRSGFKISRIRGFYGRKVKFTQDTIT
EKLDSILQEFPKLNDIHPFHADLLNILYDRDHLKIALSQLSTAKHLVENV
ARDYIRLLKYGDSLYRCKQLKRAALGRMATIIKRQKSSLEFLEQVRQHLS
RLPAIDPNTRTLLVCGYPNVGKSSFMNKVTRAQVDVQPYAFTTKSLFVGH
FDYKYLRWQVIDTPGITIEMQSITAMAHLRSAVLYFMDLSEMCGYSVAAQ
VKLYHSIKPLFANKVTILVLNKIKVVQTSCVQDIGVMDVRTTACEALLAR
PACIPDSVKTLARDIEAANGGAGVYNVELRDKYILQDPSWKYDRMPELLD
GKNVADFVDPEIEAKLLALDEEEERLER
3D structure
PDB8etg Chromatin localization of nucleophosmin organizes ribosome biogenesis.
Chainb
Resolution3.4 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna b L23 K29 T32 G37 Y124 R131 A132 G135 A191 H209 L14 K20 T23 G28 Y115 R122 A123 G126 A182 H200
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003924 GTPase activity
GO:0005525 GTP binding
Biological Process
GO:0000054 ribosomal subunit export from nucleus
GO:0042254 ribosome biogenesis
GO:0042273 ribosomal large subunit biogenesis
GO:1902626 assembly of large subunit precursor of preribosome
Cellular Component
GO:0005634 nucleus
GO:0005730 nucleolus
GO:0072686 mitotic spindle

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:8etg, PDBe:8etg, PDBj:8etg
PDBsum8etg
PubMed36423630
UniProtO94659|NOG1_SCHPO Probable nucleolar GTP-binding protein 1 (Gene Name=nog1)

[Back to BioLiP]