Structure of PDB 5e79 Chain b

Receptor sequence

>5e79b (length=504) Species: 197221 (Thermosynechococcus vestitus BP-1) [Search protein sequence]

GLPWYRVHTVLINDPGRLIAAHLMHTALVAGWAGSMALYELATFDPSDPV
LNPMWRQGMFVLPFMARLGVTGSWSGWSITGETGIDPGFWSFEGVALAHI
VLSGLLFLAACWHWVYWDLELFRDPRTGEPALDLPKMFGIHLFLAGLLCF
GFGAFHLTGLFGPGMWVSDPYGLTGSVQPVAPEWGPDGFNPYNPGGVVAH
HIAAGIVGIIAGLFHILVRPPQRLYKALRMGNIETVLSSSIAAVFFAAFV
VAGTMWYGSATTPIELFGPTRYQWDSSYFQQEINRRVQASLASGATLEEA
WSAIPEKLAFYDYIGNNPAKGGLFRTGPMNKGDGIAQAWKGHAVFRNKEG
EELFVRRMPAFFESFPVILTDKNGVVKADIPFRRAESKYSFEQQGVTVSF
YGGELNGQTFTDPPTVKSYARKAIFGEIFEFDTETLNSDGIFRTSPRGWF
TFAHAVFALLFFFGHIWHGARTLFRDVFSGIDPELSPEQVEWGFYQKVGD
VTTR

3D structure

PDB

5e79 Macromolecular diffractive imaging using imperfect crystals.

Chain

Resolution

3.5 Å

3D
structure

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Enzymatic activity

Enzyme Commision number

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	CLA	b	W185 P187 F190	W184 P186 F189
BS02	CLA	b	W185 F190 G197 A200 H201 A205 F247 F250	W184 F189 G196 A199 H200 A204 F246 F249
BS03	CLA	b	R68 L69 A146 L149 C150 F153 H201 H202 F247 A248 V252 T262	R67 L68 A145 L148 C149 F152 H200 H201 F246 A247 V251 T261
BS04	CLA	b	W33 F65 R68 L149 A248 A249 V252 F451 H455 F458 A459	W32 F64 R67 L148 A247 A248 V251 F450 H454 F457 A458
BS05	CLA	b	T27 W33 A34 V62 M66 L69 H100 L103 C150 A205 G209	T26 W32 A33 V61 M65 L68 H99 L102 C149 A204 G208
BS06	CLA	b	W91 V102 F153 H157 F162 G163 P164	W90 V101 F152 H156 F161 G162 P163
BS07	CLA	b	W33 M37 Y40 G59 F61 T327 G328 W450 F451	W32 M36 Y39 G58 F60 T326 G327 W449 F450
BS08	CLA	b	S239 S240 A243 F246 F463 H466 I467 G470 T473 L474	S238 S239 A242 F245 F462 H465 I466 G469 T472 L473
BS09	CLA	b	F139 A212 F215 H216 R220 P221 P222 L229	F138 A211 F214 H215 R219 P220 P221 L228
BS10	CLA	b	L135 P136 M138 F139 H142 L143 A146 M231 V237 S240 S241	L134 P135 M137 F138 H141 L142 A145 M230 V236 S239 S240
BS11	CLA	b	Y6 R7 V8 H9 T10 L238 I242 F462 G465 W468 H469	Y5 R6 V7 H8 T9 L237 I241 F461 G464 W467 H468
BS12	CLA	b	H9 L19 H23 H26 T27 L238 S241	H8 L18 H22 H25 T26 L237 S240
BS13	CLA	b	H9 H26 V30 W33 F462	H8 H25 V29 W32 F461
BS14	CLA	b	H9 W115	H8 W114
BS15	CLA	b	L24 M138 I141 H142 L145	L23 M137 I140 H141 L144
BS16	CLA	b	L24 W113 H114 L122	L23 W112 H113 L121

Gene Ontology

	Molecular Function
GO:0016168	chlorophyll binding
GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity

	Biological Process
GO:0009767	photosynthetic electron transport chain
GO:0009772	photosynthetic electron transport in photosystem II
GO:0015979	photosynthesis
GO:0019684	photosynthesis, light reaction

	Cellular Component
GO:0009521	photosystem
GO:0009523	photosystem II
GO:0009579	thylakoid
GO:0016020	membrane
GO:0031676	plasma membrane-derived thylakoid membrane
GO:0042651	thylakoid membrane

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Molecular Function

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Cellular Component

External links

PDB	RCSB:5e79, PDBe:5e79, PDBj:5e79
PDBsum	5e79
PubMed	26863980
UniProt	Q8DIQ1\|PSBB_THEVB Photosystem II CP47 reaction center protein (Gene Name=psbB)

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