Structure of PDB 3j7r Chain b

Receptor sequence

>3j7rb (length=75) Species: 9823 (Sus scrofa)

AKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNK
KGLKKMQANNAKAMSARAEAIKALV

3D structure

• PDB: 3j7r Structure of the Mammalian ribosome-sec61 complex to 3.4 a resolution.
• Chain: b
• Resolution: 3.9 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	rna	b	K3 S4 K5 N6 H7 T8 T9 H10 N11 Q12 S13 R14 K15 H17 R18 K22 K23 S26 Q27 R28 Y29 S31 L32 K33 D36 P37 K38 F39 R41 N42 M43 R44 F45 A46 K47 H49 N50 K52 M57 N60 N61 M65 R68	K2 S3 K4 N5 H6 T7 T8 H9 N10 Q11 S12 R13 K14 H16 R17 K21 K22 S25 Q26 R27 Y28 S30 L31 K32 D35 P36 K37 F38 R40 N41 M42 R43 F44 A45 K46 H48 N49 K51 M56 N59 N60 M64 R67

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome

Biological Process

• GO:0002181 cytoplasmic translation
• GO:0006412 translation

Cellular Component

• GO:0005737 cytoplasm
• GO:0005840 ribosome
• GO:0015934 large ribosomal subunit
• GO:0022625 cytosolic large ribosomal subunit
• GO:0098556 cytoplasmic side of rough endoplasmic reticulum membrane
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:3j7r, PDBe:3j7r, PDBj:3j7r
• PDBsum: 3j7r
• PubMed: 24930395
• UniProt: Q95281|RL29_PIG Large ribosomal subunit protein eL29 (Gene Name=RPL29)