Structure of PDB 5y6p Chain aY

Receptor sequence

>5y6paY (length=277) Species: 35689 (Griffithsia pacifica) [Search protein sequence]

VVDPFQRKFQSIGKIGIDYSRPKKLATYKRVGYSVGLDFPNAVSMAGHYS
LTDCTRAGGAAKILMKYDEYCAKGMLQVYKRSAVSTGVYTTKCTEATQPG
VAYDVRVFNRTAAFRQAQKPVNVRLGEQYAARKACVTLAHNCSREEAQFK
NMPMSCATFLAGKMEAMGTCYRTVRPSSKAEDYMAGSVRMQVYQKGNASG
VYPVGGCEDGHAKGDADLRRVIALASEYRAAQQGAAAVTGAQYASSKMAI
QLYGHSCNHEEGQFCDYPAVAAAMCRY

3D structure

PDB

5y6p Structure of phycobilisome from the red alga Griffithsia pacifica

Chain

Resolution

3.5 Å

3D
structure

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Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)
BS01	PEB	aY	F155 R156	F114 R115
BS02	PEB	aY	Y224 H300	Y183 H259
BS03	PEB	aY	C112 M116 C183 E186 Q189 F200	C71 M75 C142 E145 Q148 F159
BS04	PEB	aY	M225 V229 Q232 C298 E301 Q304	M184 V188 Q191 C257 E260 Q263
BS05	PVN	aY	Y120 K121 E136 E206 C211 R260	Y79 K80 E95 E165 C170 R219
BS06	PUB	aY	Y234 Y243 C248 D250 R261 L265	Y193 Y202 C207 D209 R220 L224
BS07	PUB	aY	N82 K121 V125 Y130 C134 E136 A143 Y144 R147	N41 K80 V84 Y89 C93 E95 A102 Y103 R106
BS08	PEB	aY	K55 I56 Y60 L66 Y69	K14 I15 Y19 L25 Y28
BS09	PEB	aY	V43 D44 Q47	V2 D3 Q6
BS10	PEB	aY	A87 G88 Y90 S91 L92 C95 R97 A158 R165	A46 G47 Y49 S50 L51 C54 R56 A117 R124
BS11	PEB	aY	N163 Y170	N122 Y129

External links

PDB	RCSB:5y6p, PDBe:5y6p, PDBj:5y6p
PDBsum	5y6p
PubMed	29045394

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