Structure of PDB 8wmv Chain a

Receptor sequence

>8wmva (length=175) Species: 52970 (Rhodomonas salina)

EMSEAIPFMPKPANIDSSMPGYAGFDPLGFTDYYSAKWMQEAEIKHGRVC
MLAALGMVFPEFAKFPQFASFSTNPLEAFYQVSPAGWGQIFLFIGVLETF
SYEKSFYNFEGGAPGALGFDPLRMSSNPASAKQYAAAEVRNGRLAMIGFS
GMLHHAIVSKQGPITQIVEQNFYPK

3D structure

• PDB: 8wmv Growth phase-dependent reorganization of cryptophyte photosystem I antennae.
• Chain: a
• Resolution: 2.94 Å

Interaction with ligand

Site #	Ligand	Ligand chain	Binding residues on receptor (original residue number in PDB)	Binding residues on receptor (residue number reindexed from 1)	Binding affinity
BS01	CLA	a	F213 Y214	F172 Y173
BS02	CLA	a	E45 A46 P48 F49 A64 F66	E4 A5 P7 F8 A23 F25
BS03	CLA	a	I56 A64 F66 D67 M80 Q81 E84 H87 R184 M187	I15 A23 F25 D26 M39 Q40 E43 H46 R143 M146
BS04	CLA	a	W79 M80 H87	W38 M39 H46
BS05	CLA	a	L93 A94 G97 K105 F106 F109 F112 A119 V123 W128 F160	L52 A53 G56 K64 F65 F68 F71 A78 V82 W87 F119
BS06	CLA	a	S124 A126 G127 Q130 I131	S83 A85 G86 Q89 I90
BS07	CLA	a	W79 A83 K86 H87 F132 I135 E139	W38 A42 K45 H46 F91 I94 E98
BS08	CLA	a	R89 M92 G156 A157 L158 F160 D161 M165 S166 Y175 E179 N182	R48 M51 G115 A116 L117 F119 D120 M124 S125 Y134 E138 N141
BS09	CLA	a	Q174 A177 A178 R181 N182 L185	Q133 A136 A137 R140 N141 L144
BS10	CLA	a	N182 L185	N141 L144
BS11	CLA	a	S191 G192 H195 H196 V199 Q207 F213 P215	S150 G151 H154 H155 V158 Q166 F172 P174
BS12	CLA	a	H195 I198	H154 I157
BS13	II0	a	M92 F160 D161 P162 L163 L185 A186 G189 M193 H196	M51 F119 D120 P121 L122 L144 A145 G148 M152 H155
BS14	II0	a	F66 D67 P68 L69 H87 V90 C91 A94 P116 F120 M187 F190	F25 D26 P27 L28 H46 V49 C50 A53 P75 F79 M146 F149
BS15	II0	a	R184 L185 I188	R143 L144 I147
BS16	IHT	a	F120 Y121 S191 L194	F79 Y80 S150 L153
BS17	II0	a	V90 Q108 I131 I135 E139	V49 Q67 I90 I94 E98
BS18	CLA	a	T140 Y143	T99 Y102

External links

• PDB: RCSB:8wmv, PDBe:8wmv, PDBj:8wmv
• PDBsum: 8wmv
• PubMed: 38734819