Structure of PDB 7umt Chain a

Receptor sequence
>7umta (length=271) Species: 10912 (Rotavirus) [Search protein sequence]
NIPITGSMDTVYSNSTREEVFLTSTLCLYYPTEASTQISDGEWKDSLSQM
FLIKGWPTGSVYFKEYSNIVDFSVDPQLYCDYNLVLMKYDQSLELDMSEL
ADLILNEWLCNPMDITLYYYQQSGESNKWISMGSSCTVKVCPLNTQTLGI
GCQTTNVDSFETVAENEKLAIVDVVDGINHKINLTTTTCTIRNCKKLGPR
ENVAVIQVGGANILDITADPTTNPQIERMMRVNWKRWWQVFYTIVDYINQ
IVQVMSKRSRSLNSAAFYYRV
3D structure
PDB7umt Rotavirus VP4 Epitope of a Broadly Neutralizing Human Antibody Defined by Its Structure Bound with an Attenuated-Strain Virion.
Chaina
Resolution3.4 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CA a D151 E154 E222 L224 A225 D96 E99 E167 L169 A170
BS02 CA a D270 T272 D274 T277 D215 T217 D219 T222
BS03 CA a Q177 D228 D231 Q122 D173 D176
BS04 CA a G206 S214 E216 G151 S159 E161
Gene Ontology
Molecular Function
GO:0046872 metal ion binding
Cellular Component
GO:0016020 membrane
GO:0019028 viral capsid
GO:0039621 T=13 icosahedral viral capsid
GO:0039624 viral outer capsid
GO:0044165 host cell endoplasmic reticulum
GO:0044166 host cell endoplasmic reticulum lumen

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Molecular Function
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Cellular Component
External links
PDB RCSB:7umt, PDBe:7umt, PDBj:7umt
PDBsum7umt
PubMed35924923
UniProtB1NP55

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