Structure of PDB 6vpv Chain a

Receptor sequence
>6vpva (length=741) Species: 2676140 (Cyanobacterium aponinum 0216) [Search protein sequence]
KAKVIVDKDPVPTSFEKWGKPGHFDRTLARGPKTTTWIWNLHADAHDFDS
QTSDLEDISRKIFSAHFGHLAVVFVWLSGMYFHGAKFSNYSAWLADPLNI
KPSAQVVWPVVGQDILNADVGGGFHGIQITSGFFQLWRASGITNEYQLYC
TAIGGLVMAGLMLFAGWFHYHKAAPKLEWFQNVESMMNHHLAGLLGLGSL
GWAGHQIHVSLPINKLLDAGVAPNEIPLPHEFILDPAKMAELYPSFAQGL
TPFFTLNWGVYSDFLTFKGGLNPVTGGLWLSDTAHHHLAIAVLFIIAGHM
YRTNWGIGHNMKEILEGHKGPFTGEGHKGLYEILTTSWHAQLAINLALLG
SLTIIVAQHMYAMPPYPYLATDYGTQLSIFTHHMWIGGFLIVGAGAHASI
FMVRDYDPAKNVNNLLDRVLRHRDAIISHLNWVCIWLGFHSFGLYIHNDT
MRALGRPQDMFSDSAIQLQPVFAQWIQGLHAAAAGATAPFASAGVSPVFG
GEVVAVGGKVAMMPITLGTADFMVHHIHAFTIHVTVLILLKGVLYSRSSR
LIPDKAELGFRFPCDGPGRGGTCQVSGWDHVFLGLFWMYNSLSIVIFHFS
WKMQSDVWGTVLPDGSVSHITGGNFAQSAITINGWLRDFLWAQAANVINS
YGSALSAYGIMFLAGHFVFAFSLMFLFSGRGYWQELIESIVWAHNKLKLA
PAIQPRALSIVQGRAVGVAHYLLGGIVTTWAFFLCRILSVG
3D structure
PDB6vpv The structure of photosystem I from a high-light tolerant Cyanobacteria.
Chaina
Resolution2.7 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 1.97.1.12: photosystem I.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 CL0 a I537 Y599 N600 S603 I604 F607 W645 L650 A654 F672 H676 F679 Y731 T738 T739 F742 I527 Y589 N590 S593 I594 F597 W635 L640 A644 F662 H666 F669 Y721 T728 T729 F732
BS02 CLA a F677 A680 F681 L683 M684 Y692 W693 L696 F667 A670 F671 L673 M674 Y682 W683 L686
BS03 CLA a F452 I456 D459 W597 N600 I642 Y731 F442 I446 D449 W587 N590 I632 Y721
BS04 CLA a W28 H33 F34 A55 H56 F58 Q61 A75 W18 H23 F24 A45 H46 F48 Q51 A65
BS05 CLA a H56 F58 I72 A75 H76 H79 L80 F84 W348 H349 Q351 L352 N355 H46 F48 I62 A65 H66 H69 L70 F74 W338 H339 Q341 L342 N345
BS06 CLA a H56 H79 V82 V83 W86 I396 F399 L400 H46 H69 V72 V73 W76 I386 F389 L390
BS07 CLA a W86 G89 F92 H93 F97 W118 W76 G79 F82 H83 F87 W108
BS08 CLA a W86 M90 Q115 I137 I139 S141 A667 Y668 W740 W76 M80 Q105 I127 I129 S131 A657 Y658 W730
BS09 CLA a Q115 V117 W118 Q123 L126 A667 Q105 V107 W108 Q113 L116 A657
BS10 CLA a V14 F77 L171 A175 F178 H179 W189 V4 F67 L161 A165 F168 H169 W179
BS11 CLA a T23 S24 F25 K27 W28 H33 K71 S74 L173 G176 Y180 H181 T13 S14 F15 K17 W18 H23 K61 S64 L163 G166 Y170 H171
BS12 CLA a V14 W189 S195 H199 T313 W315 V4 W179 S185 H189 T303 W305
BS13 CLA a F73 H76 F77 L80 W189 F190 M196 H199 H200 G203 F63 H66 F67 L70 W179 F180 M186 H189 H190 G193
BS14 CLA a G151 I152 Q157 C160 T161 G211 W212 H215 V219 P239 G141 I142 Q147 C150 T151 G201 W202 H205 V209 P229
BS15 CLA a L210 G214 H218 F256 L260 L298 L200 G204 H208 F246 L250 L288
BS16 CLA a Y156 H240 L244 Y146 H230 L234
BS17 CLA a W268 S272 L275 H295 L298 A299 V302 F500 W258 S262 L265 H285 L288 A289 V292 F490
BS18 CLA a F277 G279 L288 D292 T293 H295 H296 A299 I300 H369 M373 V505 F267 G269 L278 D282 T283 H285 H286 A289 I290 H359 M363 V495
BS19 CLA a L205 G208 S209 W212 Q216 H296 H297 I300 F304 L362 V366 P375 Y376 L195 G198 S199 W202 Q206 H286 H287 I290 F294 L352 V356 P365 Y366
BS20 CLA a N198 H199 H309 T313 W315 I317 N188 H189 H299 T303 W305 I307
BS21 CLA a M197 L201 L205 F304 A307 M310 Y311 M187 L191 L195 F294 A297 M300 Y301
BS22 CLA a I306 M310 G318 H319 I296 M300 G308 H309
BS23 CLA a E323 I324 G327 H328 E313 I314 G317 H318
BS24 CLA a H328 H337 L340 L425 L426 H318 H327 L330 L415 L416
BS25 CLA a F190 V193 M196 M197 H200 L344 T345 W348 Q351 I354 N355 L358 L359 F180 V183 M186 M187 H190 L334 T335 W338 Q341 I344 N345 L348 L349
BS26 CLA a I364 I365 Q368 I401 I542 T545 V546 I354 I355 Q358 I391 I532 T535 V536
BS27 CLA a L358 L362 I365 H369 A372 M373 F509 L348 L352 I355 H359 A362 M363 F499
BS28 CLA a W86 S141 T391 H392 W395 I396 M671 I736 W740 W76 S131 T381 H382 W385 I386 M661 I726 W730
BS29 CLA a S141 G142 F143 L146 L362 T363 V366 M370 Y376 H392 H393 I396 S131 G132 F133 L136 L352 T353 V356 M360 Y366 H382 H383 I386
BS30 CLA a H52 A53 H56 D57 L352 L356 F399 G403 A406 H407 I410 F570 R571 W588 H42 A43 H46 D47 L342 L346 F389 G393 A396 H397 I400 F560 R561 W578
BS31 CLA a F332 T333 R428 V429 H432 I436 H439 F322 T323 R418 V419 H422 I426 H429
BS32 CLA a W442 W446 F449 H450 W432 W436 F439 H440
BS33 CLA a F449 G453 I456 H457 M461 R466 D469 F471 F439 G443 I446 H447 M451 R456 D459 F461
BS34 CLA a I486 L489 H490 A493 T497 V505 I476 L479 H480 A483 T487 V495
BS35 CLA a F277 T497 P499 F500 F267 T487 P489 F490
BS36 CLA a Q368 Y371 F482 I486 Q487 F509 I525 L527 H535 H538 H608 K612 Q358 Y361 F472 I476 Q477 F499 I515 L517 H525 H528 H598 K602
BS37 CLA a W446 L447 P480 V481 F482 A483 F532 H535 H536 A539 H543 W436 L437 P470 V471 F472 A473 F522 H525 H526 A529 H533
BS38 CLA a I436 L440 V443 I542 H543 V546 I426 L430 V433 I532 H533 V536
BS39 CLA a I700 H704 L709 I690 H694 L699
BS40 CLA a F681 L718 V726 A729 H730 L733 F671 L708 V716 A719 H720 L723
BS41 CLA a N441 W442 I445 N431 W432 I435
BS42 CLA a K329 P331 F332 K319 P321 F322
BS43 PQN a M684 F685 S688 W693 A717 L718 M674 F675 S678 W683 A707 L708
BS44 SF4 a C574 G576 C583 C564 G566 C573
BS45 CLA a I670 L673 H676 F677 F679 A680 I660 L663 H666 F667 F669 A670
BS46 CLA a L646 W651 L636 W641
BS47 CLA a N441 I445 G448 F449 F452 F540 L547 I548 L593 F596 W597 N431 I435 G438 F439 F442 F530 L537 I538 L583 F586 W587
BS48 CLA a W702 K706 W692 K696
BS49 CLA a T460 A463 L464 T450 A453 L454
BS50 CLA a T45 I48 W49 I700 H704 P711 P715 T35 I38 W39 I690 H694 P701 P705
BS51 CLA a W49 L51 H52 W39 L41 H42
BS52 CLA a F264 L266 F254 L256
BS53 CLA a H439 W442 H429 W432
BS54 CLA a W442 W446 W432 W436
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0009055 electron transfer activity
GO:0016168 chlorophyll binding
GO:0016491 oxidoreductase activity
GO:0046872 metal ion binding
GO:0051539 4 iron, 4 sulfur cluster binding
Biological Process
GO:0015979 photosynthesis
Cellular Component
GO:0009522 photosystem I
GO:0009579 thylakoid
GO:0016020 membrane
GO:0031676 plasma membrane-derived thylakoid membrane
GO:0042651 thylakoid membrane

View graph for
Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6vpv, PDBe:6vpv, PDBj:6vpv
PDBsum6vpv
PubMed34435952
UniProtK9Z0B2

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