Structure of PDB 6okk Chain a

Receptor sequence
>6okka (length=120) Species: 36329 (Plasmodium falciparum 3D7) [Search protein sequence]
DQFTIRVKKYMSNPLLRRKQFALEILHPNKGSVAKKEVKERLAKMYKLNN
VNTIVLFGFKTLFGGGRTKGFGLIYKNVDAVKKFEKKYRLVREGLIDKET
KAGRRASKELKNRRKKVRGT
3D structure
PDB6okk Cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to the anti-protozoan drug emetine.
Chaina
Resolution3.3 Å
3D
structure
[Spin on]
[Spin off]
[Reset orientation]

[High quality]
[Low quality]

[White background]
[Black background]

[Download]
[Download structure with residue number starting from 1]
Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna a Q4 T6 I7 R8 V9 K11 Y12 S14 K37 R43 M47 F59 F61 T63 L64 F65 G66 K88 Y90 R94 R106 R107 K110 K113 R116 K118 V119 R120 Q2 T4 I5 R6 V7 K9 Y10 S12 K35 R41 M45 F57 F59 T61 L62 F63 G64 K86 Y88 R92 R104 R105 K108 K111 R114 K116 V117 R118
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6okk, PDBe:6okk, PDBj:6okk
PDBsum6okk
PubMed24913268
UniProtQ8I3R6

[Back to BioLiP]