Structure of PDB 6pfy Chain Z

Receptor sequence
>6pfyZ (length=739) Species: 197221 (Thermosynechococcus vestitus BP-1) [Search protein sequence]
ATKFPKFSQDLAQDPTTRRIWYAIAMAHDFESHDGMTEENLYQKIFASHF
GHLAIIFLWVSGSLFHVAWQGNFEQWVQDPVNTRPIAHAIWDPQFGKAAV
DAFTQAGASNPVDIAYSGVYHWWYTIGMRTNGDLYQGAIFLLILASLALF
AGWLHLQPKFRPSLSWFKNAESRLNHHLAGLFGVSSLAWAGHLIHVAIPE
SRGQHVGWDNFLSTMPHPAGLAPFFTGNWGVYAQNPDTASHVFGTAQGAG
TAILTFLGGFHPQTESLWLTDMAHHHLAIAVLFIVAGHMYRTQFGIGHSI
KEMMDAKDFFGTKVEGPFNMPHQGIYETYNNSLHFQLGWHLACLGVITSL
VAQHMYSLPPYAFIAQDHTTMAALYTHHQYIAGFLMVGAFAHGAIFLVRD
YDPAQNKGNVLDRVLQHKEAIISHLSWVSLFLGFHTLGLYVHNDVVVAFG
TPEKQILIEPVFAQFIQAAHGKLLYGFDTLLSNPDSIASTAWPNYGNVWL
PGWLDAINSGTNSLFLTIGPGDFLVHHAIALGLHTTTLILVKGALDARGS
KLMPDKKDFGYAFPCDGPGRGGTCDISAWDAFYLAMFWMLNTIGWVTFYW
HWKHLGVWEGNVAQFNESSTYLMGWLRDYLWLNSSQLINGYNPFGTNNLS
VWAWMFLFGHLVWATGFMFLISWRGYWQELIETLVWAHERTPLANLVRWK
DKPVALSIVQARLVGLAHFSVGYILTYAAFLIASTAAKF
3D structure
PDB6pfy Membrane protein megahertz crystallography at the European XFEL.
ChainZ
Resolution2.9 Å
3D
structure
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Enzymatic activity
Enzyme Commision number 1.97.1.12: photosystem I.
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 peptide Z F318 V461 F465 F477 T479 L480 F318 V461 F465 F477 T479 L480
BS02 CLA Z R690 T691 P692 R690 T691 P692
BS03 CL0 Z L630 W631 L630 W631
BS04 CLA Z W654 L657 F658 H660 L661 W663 A664 W654 L657 F658 H660 L661 W663 A664
BS05 CLA Z S423 S426 W427 S423 S426 W427
BS06 CLA Z H688 T691 H688 T691
BS07 SF4 Z C565 G567 C574 W673 C565 G567 C574 W673
BS08 CLA Z S426 L430 G433 F434 L538 I539 F587 W588 S426 L430 G433 F434 L538 I539 F587 W588
BS09 CLA Z V441 L531 F587 W588 N591 W595 L622 W663 F719 V441 L531 F587 W588 N591 W595 L622 W663 F719
BS10 CLA Z Y440 A528 N591 W595 F598 L622 W625 S634 F656 H660 W663 Y723 T726 Y727 F730 Y440 A528 N591 W595 F598 L622 W625 S634 F656 H660 W663 Y723 T726 Y727 F730
BS11 CLA Z A664 T665 F667 M668 I671 S672 Y676 W677 A664 T665 F667 M668 I671 S672 Y676 W677
BS12 CLA Z F4 A27 H28 H33 F4 A27 H28 H33
BS13 CLA Z H28 F30 Y42 I45 H49 H52 L53 R173 L333 H334 L337 L341 H28 F30 Y42 I45 H49 H52 L53 R173 L333 H334 L337 L341
BS14 CLA Z H28 H52 I56 W59 F384 H28 H52 I56 W59 F384
BS15 CLA Z I55 L58 W59 G62 F65 H66 W69 I55 L58 W59 G62 F65 H66 W69
BS16 CLA Z A87 H88 D113 I114 A115 Y116 S117 V651 W652 A87 H88 D113 I114 A115 Y116 S117 V651 W652
BS17 CLA Z I90 W91 D92 Q94 F95 D113 S650 V651 W654 I90 W91 D92 Q94 F95 D113 S650 V651 W654
BS18 CLA Z F46 F50 A151 H155 F160 W166 F46 F50 A151 H155 F160 W166
BS19 CLA Z W166 H176 Q293 W166 H176 Q293
BS20 CLA Z F46 H49 F50 W122 W166 R173 H176 H177 L181 F46 H49 F50 W122 W166 R173 H176 H177 L181
BS21 CLA Z I126 G127 M128 D133 Q136 F140 L144 A188 W189 H192 H195 V196 G207 W208 F211 I126 G127 M128 D133 Q136 F140 L144 A188 W189 H192 H195 V196 G207 W208 F211
BS22 CLA Z A188 G191 I194 H195 F211 M215 P216 L221 A188 G191 I194 H195 F211 M215 P216 L221
BS23 CLA Z F224 G227 W229 G230 L254 H274 L277 A278 F224 G227 W229 G230 L254 H274 L277 A278
BS24 CLA Z F256 L267 H274 H275 I279 H354 L358 F256 L267 H274 H275 I279 H354 L358
BS25 CLA Z F182 S185 S186 W189 M272 H275 H276 I279 V351 M355 P360 Y361 F182 S185 S186 W189 M272 H275 H276 I279 V351 M355 P360 Y361
BS26 CLA Z L178 F283 A286 M289 Y290 M303 L178 F283 A286 M289 Y290 M303
BS27 CLA Z N175 H176 A179 G180 V184 H288 T292 N175 H176 A179 G180 V184 H288 T292
BS28 CLA Z V285 H288 M289 I296 G297 H298 V285 H288 M289 I296 G297 H298
BS29 CLA Z H298 M303 A306 D308 F309 F310 F318 H298 M303 A306 D308 F309 F310 F318
BS30 CLA Z M304 F318 M320 H322 W339 V410 M304 F318 M320 H322 W339 V410
BS31 CLA Z A170 R173 H177 F182 I300 Y326 Y329 N330 W339 H340 C343 I347 A170 R173 H177 F182 I300 Y326 Y329 N330 W339 H340 C343 I347
BS32 CLA Z V346 S349 L350 Q353 Q379 M386 F390 L533 T536 T537 M589 V346 S349 L350 Q353 Q379 M386 F390 L533 T536 T537 M589
BS33 CLA Z W339 C343 V346 L350 H354 S357 F515 W339 C343 V346 L350 H354 S357 F515
BS34 CLA Z W59 A373 T376 H377 Y380 I381 I724 A728 W59 A373 T376 H377 Y380 I381 I724 A728
BS35 CLA Z W59 S117 G118 W122 L344 T348 M355 Y361 H377 H378 W59 S117 G118 W122 L344 T348 M355 Y361 H377 H378
BS36 CLA Z I24 A25 H28 D29 L337 G388 H392 R399 W579 F582 V721 I24 A25 H28 D29 L337 G388 H392 R399 W579 F582 V721
BS37 CLA Z M320 R413 H417 H424 M320 R413 H417 H424
BS38 CLA Z H424 W427 H424 W427
BS39 CLA Z G438 L439 V441 H442 V445 K454 G438 L439 V441 H442 V445 K454
BS40 CLA Z I466 H470 L481 W503 I466 H470 L481 W503
BS41 CLA Z L480 I487 A488 A491 G496 N497 L480 I487 A488 A491 G496 N497
BS42 CLA Z P493 N494 P493 N494
BS43 CLA Z Q353 Y356 Y375 A463 I466 Q467 F515 H526 I529 V596 Y599 W600 Q353 Y356 Y375 A463 I466 Q467 F515 H526 I529 V596 Y599 W600
BS44 CLA Z F431 L432 P460 F462 A463 F523 H526 H527 F431 L432 P460 F462 A463 F523 H526 H527
BS45 CLA Z L425 V428 A530 H534 L425 V428 A530 H534
BS46 CLA Z T17 W21 L684 H688 R698 W699 P703 T17 W21 L684 H688 R698 W699 P703
BS47 CLA Z F658 M668 F669 H718 F658 M668 F669 H718
BS48 PQN Z M668 F669 S672 R674 W677 A705 L706 A711 M668 F669 S672 R674 W677 A705 L706 A711
BS49 CLA Z L430 F431 F434 H435 L430 F431 F434 H435
Gene Ontology
Molecular Function
GO:0000287 magnesium ion binding
GO:0009055 electron transfer activity
GO:0016168 chlorophyll binding
GO:0016491 oxidoreductase activity
GO:0046872 metal ion binding
GO:0051539 4 iron, 4 sulfur cluster binding
Biological Process
GO:0015979 photosynthesis
Cellular Component
GO:0009522 photosystem I
GO:0009579 thylakoid
GO:0016020 membrane
GO:0031676 plasma membrane-derived thylakoid membrane
GO:0042651 thylakoid membrane

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6pfy, PDBe:6pfy, PDBj:6pfy
PDBsum6pfy
PubMed31685819
UniProtP0A407|PSAB_THEVB Photosystem I P700 chlorophyll a apoprotein A2 (Gene Name=psaB)

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