Structure of PDB 6om6 Chain Z

Receptor sequence
>6om6Z (length=58) Species: 562 (Escherichia coli) [Search protein sequence]
AKTIKITQTRSAIGRLPKHKATLLGLGLRRIGHTVEREDTPAIRGMINAV
SFMVKVEE
3D structure
PDB6om6 trans-Translation inhibitors bind to a novel site on the ribosome and clear Neisseria gonorrhoeae in vivo.
ChainZ
Resolution3.1 Å
3D
structure
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Enzymatic activity
Enzyme Commision number ?
Interaction with ligand
Site
#		 Ligand Ligand
chain		 Binding residues on receptor
(original residue number in PDB)		 Binding residues on receptor
(residue number reindexed from 1)		 Binding affinity
BS01 rna Z R11 S12 I14 P18 K19 A22 T23 L25 G26 R30 R31 I32 R38 E39 A43 G46 M47 R10 S11 I13 P17 K18 A21 T22 L24 G25 R29 R30 I31 R37 E38 A42 G45 M46
BS02 rna Z H20 F53 H19 F52
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0000027 ribosomal large subunit assembly
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0015934 large ribosomal subunit
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Cellular Component
External links
PDB RCSB:6om6, PDBe:6om6, PDBj:6om6
PDBsum6om6
PubMed33741965
UniProtP0AG51|RL30_ECOLI Large ribosomal subunit protein uL30 (Gene Name=rpmD)

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